IVF0025706 (gene) Melon (IVF77) v1

Overview


Name	IVF0025706
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Histone superfamily protein
Location	chr03: 11693856 .. 11694491 (+)
RNA-Seq Expression	IVF0025706
Synteny	IVF0025706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCAAGGTCTCACATATCCTTAACAATATTCAAATCTTGTTTCACAAGCTTCATCTCCAGAGCATCGATGGCTCGTACCAAACAAACAGCCCGTAAATCTACTGGCGGCAAGGCTCCTCGGAAGCAATTGGCTACTAAGGCCGCTCGAAAGTCGGCTCCGGCGACTGGAGGAGTAAAGAAGCCCCACAGATTCAGGCCGGGGACAGTGGCACTAAGAGAGATCCGAAAGTATCAGAAGAGCACGGAACTTCTGATCCGAAAGCTTCCATTCCAAAGGCTAGTTAGAGAAATCGCTCAGGATTTCAAGACTGATCTTCGGTTCCAAAGCAGCGCTGTTTCGGCACTGCAGGAAGCGGCAGAGGCTTATCTTGTGGGATTGTTTGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTAACCATTATGCCTAAAGACATTCAATTAGCCAGACGGATTAGAGGCGAGAGAGCTTAGAGATCTACTGATGAATCATCATTTTGGCGTTTGATATGTAGAATCCTTGCGTAGTTCAATCTTGTCTAGTTCTTACTTACTTTCTGGATCTTTTTGTTTCTTAGAAATGCAATCGCGTTTTATGGCAAGTTTGGTGTATGATTTAAATCTAAT

mRNA sequence

ATGCCATCAAGGTCTCACATATCCTTAACAATATTCAAATCTTGTTTCACAAGCTTCATCTCCAGAGCATCGATGGCTCGTACCAAACAAACAGCCCGTAAATCTACTGGCGGCAAGGCTCCTCGGAAGCAATTGGCTACTAAGGCCGCTCGAAAGTCGGCTCCGGCGACTGGAGGAGTAAAGAAGCCCCACAGATTCAGGCCGGGGACAGTGGCACTAAGAGAGATCCGAAAGTATCAGAAGAGCACGGAACTTCTGATCCGAAAGCTTCCATTCCAAAGGCTAGTTAGAGAAATCGCTCAGGATTTCAAGACTGATCTTCGGTTCCAAAGCAGCGCTGTTTCGGCACTGCAGGAAGCGGCAGAGGCTTATCTTGTGGGATTGTTTGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTAACCATTATGCCTAAAGACATTCAATTAGCCAGACGGATTAGAGGCGAGAGAGCTTAGAGATCTACTGATGAATCATCATTTTGGCGTTTGATATGTAGAATCCTTGCGTAGTTCAATCTTGTCTAGTTCTTACTTACTTTCTGGATCTTTTTGTTTCTTAGAAATGCAATCGCGTTTTATGGCAAGTTTGGTGTATGATTTAAATCTAAT

Coding sequence (CDS)

ATGCCATCAAGGTCTCACATATCCTTAACAATATTCAAATCTTGTTTCACAAGCTTCATCTCCAGAGCATCGATGGCTCGTACCAAACAAACAGCCCGTAAATCTACTGGCGGCAAGGCTCCTCGGAAGCAATTGGCTACTAAGGCCGCTCGAAAGTCGGCTCCGGCGACTGGAGGAGTAAAGAAGCCCCACAGATTCAGGCCGGGGACAGTGGCACTAAGAGAGATCCGAAAGTATCAGAAGAGCACGGAACTTCTGATCCGAAAGCTTCCATTCCAAAGGCTAGTTAGAGAAATCGCTCAGGATTTCAAGACTGATCTTCGGTTCCAAAGCAGCGCTGTTTCGGCACTGCAGGAAGCGGCAGAGGCTTATCTTGTGGGATTGTTTGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTAACCATTATGCCTAAAGACATTCAATTAGCCAGACGGATTAGAGGCGAGAGAGCTTAG

Protein sequence

MPSRSHISLTIFKSCFTSFISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

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BLAST of IVF0025706 vs. ExPASy Swiss-Prot
Match: P68429 (Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.4e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. ExPASy Swiss-Prot
Match: P68430 (Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.4e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. ExPASy Swiss-Prot
Match: P68427 (Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.4e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. ExPASy Swiss-Prot
Match: P68428 (Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.4e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. ExPASy Swiss-Prot
Match: P59226 (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-66
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

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BLAST of IVF0025706 vs. ExPASy TrEMBL
Match: R0IBZ4 (Histone domain-containing protein (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10021660mg PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.5e-65
Identity = 143/162 (88.27%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 3   SRSHISLTIFKSCFTSF----ISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 62
           S+S++SL   K  F +F    I    MARTKQTARKSTGGKAPRKQLATKAARKSAPATG
Sbjct: 8   SQSNLSLESLKQIFKTFSSFRIYSKEMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 67

Query: 63  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQ 122
           GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQ
Sbjct: 68  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 127

Query: 123 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161
           EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 128 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169

[Close]

BLAST of IVF0025706 vs. ExPASy TrEMBL
Match: A0A446K952 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G195880 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 22  RASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK 81
           R SMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK
Sbjct: 64  RHSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQK 123

Query: 82  STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKR 141
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKR
Sbjct: 124 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKR 183

Query: 142 VTIMPKDIQLARRIRGERA 161
           VTIMPKDIQLARRIRGERA
Sbjct: 184 VTIMPKDIQLARRIRGERA 202

[Close]

BLAST of IVF0025706 vs. ExPASy TrEMBL
Match: A0A1S2YZT5 (Histone H3.2 OS=Cicer arietinum OX=3827 GN=LOC101494545 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.5e-65
Identity = 142/159 (89.31%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 2   PSRSHISLTIFKSCFTSFISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 61
           P+  HI    F+S   S      MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK
Sbjct: 84  PNFPHIQ---FQSLILSHFHTIPMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 143

Query: 62  KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAA 121
           KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAA
Sbjct: 144 KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAA 203

Query: 122 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161
           EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 204 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 239

[Close]

BLAST of IVF0025706 vs. ExPASy TrEMBL
Match: A0A0D2R575 (Histone domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_004G277300 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.2e-65
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 4   RSHISLTIFKSCFTSFI-SRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 63
           R  ++    ++ FTS++ + +SMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK
Sbjct: 36  RKFLNFLASQTDFTSYLRTISSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 95

Query: 64  PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAE 123
           PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAE
Sbjct: 96  PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAE 155

Query: 124 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161
           AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 156 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 193

[Close]

BLAST of IVF0025706 vs. ExPASy TrEMBL
Match: A0A6J0MQA6 (histone H3-like centromeric protein CSE4 OS=Raphanus sativus OX=3726 GN=LOC108845648 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.2e-65
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 3   SRSHISLTIFKSCFTSFISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 62
           S  H SLT  +   ++F     MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK
Sbjct: 144 SSPHFSLTFSREVTSNF----DMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 203

Query: 63  PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAE 122
           PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAE
Sbjct: 204 PHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAE 263

Query: 123 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 161
           AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 264 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 297

[Close]

BLAST of IVF0025706 vs. NCBI nr
Match: EOA34158.1 (hypothetical protein CARUB_v10021660mg, partial [Capsella rubella])

HSP 1 Score: 257 bits (656), Expect = 4.40e-85
Identity = 143/162 (88.27%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 3   SRSHISLTIFKSCFTSFIS----RASMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 62
           S+S++SL   K  F +F S       MARTKQTARKSTGGKAPRKQLATKAARKSAPATG
Sbjct: 8   SQSNLSLESLKQIFKTFSSFRIYSKEMARTKQTARKSTGGKAPRKQLATKAARKSAPATG 67

Query: 63  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQ 122
           GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQ
Sbjct: 68  GVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQ 127

Query: 123 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 160
           EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 128 EAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169

[Close]

BLAST of IVF0025706 vs. NCBI nr
Match: WP_212576888.1 (histone H3, partial [Vibrio parahaemolyticus])

HSP 1 Score: 256 bits (653), Expect = 8.99e-85
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 18  SFISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIR 77
           SF  + +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIR
Sbjct: 17  SFSIKRAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIR 76

Query: 78  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAI 137
           KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAI
Sbjct: 77  KYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAI 136

Query: 138 HAKRVTIMPKDIQLARRIRGERA 160
           HAKRVTIMPKDIQLARRIRGERA
Sbjct: 137 HAKRVTIMPKDIQLARRIRGERA 159

[Close]

BLAST of IVF0025706 vs. NCBI nr
Match: KAG7558967.1 (Histone-fold, partial [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 256 bits (653), Expect = 9.30e-85
Identity = 140/153 (91.50%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 8   SLTIFKSCFTSFISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFR 67
           S +  KS   SF+    MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFR
Sbjct: 8   SFSTIKSFNFSFVRILKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFR 67

Query: 68  PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVG 127
           PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVG
Sbjct: 68  PGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVG 127

Query: 128 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 160
           LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 128 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 160

[Close]

BLAST of IVF0025706 vs. NCBI nr
Match: KAG7596389.1 (Histone H2A/H2B/H3, partial [Arabidopsis suecica])

HSP 1 Score: 256 bits (653), Expect = 1.06e-84
Identity = 146/159 (91.82%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 3   SRSHISLTIFKSCFTSF-ISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 62
           SRS +SL IFK    SF I+   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK
Sbjct: 7   SRSQLSL-IFKLKSNSFLITFYFMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 66

Query: 63  KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAA 122
           KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAA
Sbjct: 67  KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAA 126

Query: 123 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 160
           EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 127 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 164

[Close]

BLAST of IVF0025706 vs. NCBI nr
Match: KAG7645649.1 (histone H3/CENP-A, partial [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 256 bits (653), Expect = 1.22e-84
Identity = 146/159 (91.82%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 3   SRSHISLTIFKSCFTSF-ISRASMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 62
           SRS +SL IFK    SF I+   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK
Sbjct: 11  SRSQLSL-IFKLKSNSFLITFYFMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVK 70

Query: 63  KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAA 122
           KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAA
Sbjct: 71  KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAA 130

Query: 123 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 160
           EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 131 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 168

[Close]

BLAST of IVF0025706 vs. TAIR 10
Match: AT1G09200.1 (Histone superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. TAIR 10
Match: AT3G27360.1 (Histone superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. TAIR 10
Match: AT5G10390.1 (Histone superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. TAIR 10
Match: AT5G10400.1 (Histone superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of IVF0025706 vs. TAIR 10
Match: AT5G65360.1 (Histone superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 25  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 84
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 85  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTI 144
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 145 MPKDIQLARRIRGERA 161
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of IVF0025706 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68429	7.4e-67	100.00	Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 PE=1 SV=2	[more]
P68430	7.4e-67	100.00	Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2 SV=2	[more]
P68427	7.4e-67	100.00	Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2	[more]
P68428	7.4e-67	100.00	Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2	[more]
P59226	1.7e-66	99.26	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]

BLAST of IVF0025706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
R0IBZ4	2.5e-65	88.27	Histone domain-containing protein (Fragment) OS=Capsella rubella OX=81985 GN=CAR...	[more]
A0A446K952	5.5e-65	99.28	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G...	[more]
A0A1S2YZT5	5.5e-65	89.31	Histone H3.2 OS=Cicer arietinum OX=3827 GN=LOC101494545 PE=3 SV=1	[more]
A0A0D2R575	7.2e-65	88.61	Histone domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_004G27...	[more]
A0A6J0MQA6	7.2e-65	89.24	histone H3-like centromeric protein CSE4 OS=Raphanus sativus OX=3726 GN=LOC10884...	[more]

BLAST of IVF0025706 vs. NCBI nr


Match Name	E-value	Identity	Description
EOA34158.1	4.40e-85	88.27	hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]	[more]
WP_212576888.1	8.99e-85	96.50	histone H3, partial [Vibrio parahaemolyticus]	[more]
KAG7558967.1	9.30e-85	91.50	Histone-fold, partial [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7596389.1	1.06e-84	91.82	Histone H2A/H2B/H3, partial [Arabidopsis suecica]	[more]
KAG7645649.1	1.22e-84	91.82	histone H3/CENP-A, partial [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of IVF0025706 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09200.1	1.2e-67	99.26	Histone superfamily protein	[more]
AT3G27360.1	1.2e-67	99.26	Histone superfamily protein	[more]
AT5G10390.1	1.2e-67	99.26	Histone superfamily protein	[more]
AT5G10400.1	1.2e-67	99.26	Histone superfamily protein	[more]
AT5G65360.1	1.2e-67	99.26	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 104..122 score: 84.78 coord: 138..159 score: 94.86 coord: 41..55 score: 92.32 coord: 58..79 score: 89.33 coord: 27..41 score: 97.1 coord: 82..99 score: 97.46 coord: 122..138 score: 96.93
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 58..160 e-value: 2.3E-74 score: 263.0
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 15..160
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 39..45
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 91..99
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 25..156 e-value: 1.4E-53 score: 180.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 26..160 e-value: 2.2E-75 score: 253.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..67
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 15..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025706.1	IVF0025706.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity