IVF0025604 (gene) Melon (IVF77) v1

Overview


Name	IVF0025604
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase epsilon chain
Location	chr10: 23169349 .. 23169597 (+)
RNA-Seq Expression	IVF0025604
Synteny	IVF0025604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAACAAGTCCAAGGACAGGTCGGATTACGAATCAAGAACCAATATGATAGAATAAGAGAGAGTATGAATGAGGTCTTTCGACAGACAGGAAGGAGAATAGGTCTAGCCGCTTGCATTCAGTCAGAATCCAAGAGTAGGAGCAGGGGAGTAGGTCAGATCAAGACTAATCCGCCTGCTAACCCAATTTTGAGTAATGTTGAGTTCACGAGTCAGAAGAGTAGTGTATTCTTATCGAGATCGTAA

mRNA sequence

ATGGATAAACAAGTCCAAGGACAGGTCGGATTACGAATCAAGAACCAATATGATAGAATAAGAGAGAGTATGAATGAGGTCTTTCGACAGACAGGAAGGAGAATAGGTCTAGCCGCTTGCATTCAGTCAGAATCCAAGAGTAGGAGCAGGGGAGTAGGTCAGATCAAGACTAATCCGCCTGCTAACCCAATTTTGAGTAATGTTGAGTTCACGAGTCAGAAGAGTAGTGTATTCTTATCGAGATCGTAA

Coding sequence (CDS)

ATGGATAAACAAGTCCAAGGACAGGTCGGATTACGAATCAAGAACCAATATGATAGAATAAGAGAGAGTATGAATGAGGTCTTTCGACAGACAGGAAGGAGAATAGGTCTAGCCGCTTGCATTCAGTCAGAATCCAAGAGTAGGAGCAGGGGAGTAGGTCAGATCAAGACTAATCCGCCTGCTAACCCAATTTTGAGTAATGTTGAGTTCACGAGTCAGAAGAGTAGTGTATTCTTATCGAGATCGTAA

Protein sequence

MDKQVQGQVGLRIKNQYDRIRESMNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS

Homology

[Close]

BLAST of IVF0025604 vs. ExPASy TrEMBL
Match: A0A1S4E452 (ATP synthase epsilon chain, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991998 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 61/71 (85.92%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MDKQVQGQVGLRIKNQYDRIRESMNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPP 60
          MDKQVQG V LRIKNQYDRIRESMNE+FRQTGR I LAACIQSESKSRSRGVGQIKTN  
Sbjct: 1  MDKQVQGWVKLRIKNQYDRIRESMNEIFRQTGRGIALAACIQSESKSRSRGVGQIKTNLS 60

Query: 61 ANPILSNVEFT 72
          AN ILS VE T
Sbjct: 61 ANSILSLVEVT 71

[Close]

BLAST of IVF0025604 vs. ExPASy TrEMBL
Match: A0A5D3BWF2 (ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80341G00010 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-19
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 24 MNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSR 82
          MNE+FRQTGRRI LAACIQSESKSRSRGVGQIKTNP ANPILS  EFTSQKSSVFLSR
Sbjct: 1  MNEIFRQTGRRIALAACIQSESKSRSRGVGQIKTNPSANPILSLAEFTSQKSSVFLSR 58

[Close]

BLAST of IVF0025604 vs. ExPASy TrEMBL
Match: A0A5D3D2E1 (ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2065G00090 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 32  GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 83
           GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS
Sbjct: 104 GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 154

[Close]

BLAST of IVF0025604 vs. ExPASy TrEMBL
Match: A0A5A7TWU1 (ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1572G00120 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-14
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 32  GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 83
           GRRI LAACIQSESKSRSRGVG IKTNP ANPILS  EFTSQKSSVFLSRS
Sbjct: 61  GRRIALAACIQSESKSRSRGVGHIKTNPHANPILSIAEFTSQKSSVFLSRS 111

[Close]

BLAST of IVF0025604 vs. ExPASy TrEMBL
Match: A0A5A7TMB1 (ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43195G00020 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-14
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 24 MNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTS 73
          MNE+FRQTGRRI LAACIQSESKSRSRGVGQIKTNP ANPILS  EFT+
Sbjct: 1  MNEIFRQTGRRIALAACIQSESKSRSRGVGQIKTNPSANPILSLAEFTN 49

[Close]

BLAST of IVF0025604 vs. NCBI nr
Match: XP_016903002.1 (PREDICTED: ATP synthase epsilon chain, chloroplastic-like [Cucumis melo])

HSP 1 Score: 111 bits (277), Expect = 2.06e-29
Identity = 61/71 (85.92%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MDKQVQGQVGLRIKNQYDRIRESMNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPP 60
          MDKQVQG V LRIKNQYDRIRESMNE+FRQTGR I LAACIQSESKSRSRGVGQIKTN  
Sbjct: 1  MDKQVQGWVKLRIKNQYDRIRESMNEIFRQTGRGIALAACIQSESKSRSRGVGQIKTNLS 60

Query: 61 ANPILSNVEFT 71
          AN ILS VE T
Sbjct: 61 ANSILSLVEVT 71

[Close]

BLAST of IVF0025604 vs. NCBI nr
Match: TYK03405.1 (ATP synthase epsilon chain [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 1.18e-26
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 24 MNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSR 81
          MNE+FRQTGRRI LAACIQSESKSRSRGVGQIKTNP ANPILS  EFTSQKSSVFLSR
Sbjct: 1  MNEIFRQTGRRIALAACIQSESKSRSRGVGQIKTNPSANPILSLAEFTSQKSSVFLSR 58

[Close]

BLAST of IVF0025604 vs. NCBI nr
Match: KAA0065863.1 (ATP synthase epsilon chain [Cucumis melo var. makuwa] >TYK17668.1 ATP synthase epsilon chain [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.81e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 32  GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 82
           GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS
Sbjct: 104 GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 154

[Close]

BLAST of IVF0025604 vs. NCBI nr
Match: KAA0042509.1 (ATP synthase epsilon chain [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 8.29e-20
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 24 MNEVFRQTGRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTS 72
          MNE+FRQTGRRI LAACIQSESKSRSRGVGQIKTNP ANPILS  EFT+
Sbjct: 1  MNEIFRQTGRRIALAACIQSESKSRSRGVGQIKTNPSANPILSLAEFTN 49

[Close]

BLAST of IVF0025604 vs. NCBI nr
Match: KAA0046377.1 (ATP synthase epsilon chain [Cucumis melo var. makuwa] >TYK06537.1 ATP synthase epsilon chain [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.21e-19
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 32  GRRIGLAACIQSESKSRSRGVGQIKTNPPANPILSNVEFTSQKSSVFLSRS 82
           GRRI LAACIQSESKSRSRGVG IKTNP ANPILS  EFTSQKSSVFLSRS
Sbjct: 61  GRRIALAACIQSESKSRSRGVGHIKTNPHANPILSIAEFTSQKSSVFLSRS 111

The following BLAST results are available for this feature:

BLAST of IVF0025604 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E452	3.9e-22	85.92	ATP synthase epsilon chain, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107...	[more]
A0A5D3BWF2	4.0e-19	91.38	ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3D2E1	4.4e-18	100.00	ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TWU1	3.0e-14	90.20	ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TMB1	3.9e-14	87.76	ATP synthase epsilon chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of IVF0025604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903002.1	2.06e-29	85.92	PREDICTED: ATP synthase epsilon chain, chloroplastic-like [Cucumis melo]	[more]
TYK03405.1	1.18e-26	91.38	ATP synthase epsilon chain [Cucumis melo var. makuwa]	[more]
KAA0065863.1	3.81e-24	100.00	ATP synthase epsilon chain [Cucumis melo var. makuwa] >TYK17668.1 ATP synthase e...	[more]
KAA0042509.1	8.29e-20	87.76	ATP synthase epsilon chain [Cucumis melo var. makuwa]	[more]
KAA0046377.1	1.21e-19	90.20	ATP synthase epsilon chain [Cucumis melo var. makuwa] >TYK06537.1 ATP synthase e...	[more]

BLAST of IVF0025604 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025604.1	IVF0025604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism