IVF0025235 (gene) Melon (IVF77) v1

Overview


Name	IVF0025235
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 3034570 .. 3034770 (+)
RNA-Seq Expression	IVF0025235
Synteny	IVF0025235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGAGTCTCCTCGCTGTGGGTCTCCGTCGTCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGTTTTCATCGTGCGTCGTTCGTCATTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGCGGGAAGAAGGAAAGATATGGATTTTGAAGAAGTGA

mRNA sequence

ATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGAGTCTCCTCGCTGTGGGTCTCCGTCGTCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGTTTTCATCGTGCGTCGTTCGTCATTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGCGGGAAGAAGGAAAGATATGGATTTTGAAGAAGTGA

Coding sequence (CDS)

ATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGAGTCTCCTCGCTGTGGGTCTCCGTCGTCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGTTTTCATCGTGCGTCGTTCGTCATTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGCGGGAAGAAGGAAAGATATGGATTTTGAAGAAGTGA

Protein sequence

MKNERSRTHRQRYESPRCGSPSSRRKDVEMRRMGFHRASFVISEGRDFEEGKWSVREEGKIWILKK

Homology

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BLAST of IVF0025235 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 2.54e-04
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 12 RYESPRCGSPSSRRKDVEMRRMGFHRASF------VISEGRDFEEGKWSVREEGKIWILK 66
          RY SPR GSPSSRRKD+EMRRMG  R  F      V+ EG        +V +EGK  ILK
Sbjct: 10 RYGSPRHGSPSSRRKDMEMRRMGL-RLGFSSCVVVVVLEG--------NVHDEGKGGILK 61

The following BLAST results are available for this feature:

BLAST of IVF0025235 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025235 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025235 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034002.1	2.54e-04	54.10	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-...	[more]

BLAST of IVF0025235 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025235.1	IVF0025235.1	mRNA