IVF0024387 (gene) Melon (IVF77) v1

Overview


Name	IVF0024387
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Flocculation protein FLO11-like
Location	chr08: 30566520 .. 30566942 (+)
RNA-Seq Expression	IVF0024387
Synteny	IVF0024387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTAGAGTTAAAGTGAATGTTGGTGAATCTATCTTCAATCACTTGCTACGTCACGTTAATACGTTTGCGATTCACATTCCTATTTTCTTTCCAAGAATCCTGAGTGGATTTATTTTAGCTCAACAACAAACTATACTGACCCTAGTTGATATTGTGGGTCCGGCTCCACGAGTTATTCCACTAAGTATGCGACTGTTTCAAGGCTCCCACATACCTGATGTTACTGCTGCCTTTGCCAATGCACCTGAAGGAACCAGTGCTGCTGCCGCTACAAATTCAACTGTTGGTCAACCTCTGCTACTATCTATTCCACTTGCCAATTGTCTCCTGCATGCTTTAATGGTCGAATCCTGCTCGCTTACTCGCCAAATCAGTGAACTATCTGATCGGCGTACTGTGTTGGATGCTATTCTATGA

mRNA sequence

ATGGGAATTAGAGTTAAAGTGAATGTTGGTGAATCTATCTTCAATCACTTGCTACGTCACGTTAATACGTTTGCGATTCACATTCCTATTTTCTTTCCAAGAATCCTGAGTGGATTTATTTTAGCTCAACAACAAACTATACTGACCCTAGTTGATATTGTGGGTCCGGCTCCACGAGTTATTCCACTAAGTATGCGACTGTTTCAAGGCTCCCACATACCTGATGTTACTGCTGCCTTTGCCAATGCACCTGAAGGAACCAGTGCTGCTGCCGCTACAAATTCAACTGTTGGTCAACCTCTGCTACTATCTATTCCACTTGCCAATTGTCTCCTGCATGCTTTAATGGTCGAATCCTGCTCGCTTACTCGCCAAATCAGTGAACTATCTGATCGGCGTACTGTGTTGGATGCTATTCTATGA

Coding sequence (CDS)

ATGGGAATTAGAGTTAAAGTGAATGTTGGTGAATCTATCTTCAATCACTTGCTACGTCACGTTAATACGTTTGCGATTCACATTCCTATTTTCTTTCCAAGAATCCTGAGTGGATTTATTTTAGCTCAACAACAAACTATACTGACCCTAGTTGATATTGTGGGTCCGGCTCCACGAGTTATTCCACTAAGTATGCGACTGTTTCAAGGCTCCCACATACCTGATGTTACTGCTGCCTTTGCCAATGCACCTGAAGGAACCAGTGCTGCTGCCGCTACAAATTCAACTGTTGGTCAACCTCTGCTACTATCTATTCCACTTGCCAATTGTCTCCTGCATGCTTTAATGGTCGAATCCTGCTCGCTTACTCGCCAAATCAGTGAACTATCTGATCGGCGTACTGTGTTGGATGCTATTCTATGA

Protein sequence

MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRVIPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESCSLTRQISELSDRRTVLDAIL

Homology

[Close]

BLAST of IVF0024387 vs. ExPASy TrEMBL
Match: A0A5D3DV74 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001030 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV
Sbjct: 852 MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 911

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC
Sbjct: 912 IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 971

Query: 121 SLTRQISELSDRRTVLDAIL 141
           SLTRQISELSDRRTVLDAIL
Sbjct: 972 SLTRQISELSDRRTVLDAIL 991

[Close]

BLAST of IVF0024387 vs. ExPASy TrEMBL
Match: A0A5A7V4G0 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00570 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV
Sbjct: 859 MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 918

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC
Sbjct: 919 IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 978

Query: 121 SLTRQISELSDRRTVLDAIL 141
           SLTRQISELSDRRTVLDAIL
Sbjct: 979 SLTRQISELSDRRTVLDAIL 998

[Close]

BLAST of IVF0024387 vs. ExPASy TrEMBL
Match: A0A5A7VCX5 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00340 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           +G RVKVNVG+ IFNHLLRHV+TFAIHIPI FPR+LSGFIL+QQ TILT +D VG  PR+
Sbjct: 605 VGTRVKVNVGKFIFNHLLRHVDTFAIHIPICFPRLLSGFILSQQPTILTPLDTVGTTPRI 664

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IP+SMRLFQG HIPDV A F +AP GT AA AT  T+GQPL+LS+PLAN LL ALM ES 
Sbjct: 665 IPVSMRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESR 724

Query: 121 SLTRQISELSDRRTVLDAIL 141
           SLTRQISELSDR+TVLD +L
Sbjct: 725 SLTRQISELSDRQTVLDVVL 744

[Close]

BLAST of IVF0024387 vs. ExPASy TrEMBL
Match: A0A5D3E3G2 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00830 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.6e-45
Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1    MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
            +G  VKVNVGE IFNHLLRHV+TF+IHI I F RILSGF+LAQQ TILTL+D +G APRV
Sbjct: 924  VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 983

Query: 61   IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
            IPLSMRLFQGSHIP+V A F NAPEGTS  AAT+  VG PL+  + LAN LL AL+ ES 
Sbjct: 984  IPLSMRLFQGSHIPNVAAEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1043

Query: 121  SLTRQISELSDRRTVLDAIL 141
            SLTRQIS+L+DRRTVLDAIL
Sbjct: 1044 SLTRQISDLTDRRTVLDAIL 1063

[Close]

BLAST of IVF0024387 vs. ExPASy TrEMBL
Match: A0A5A7SWY8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00540 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1    MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
            +G  VKVNVGE IFNHLLRHV+TF+IHI I F RILSGF+LAQQ TILTL+D +G APRV
Sbjct: 1250 VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 1309

Query: 61   IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
            IPLSMRLFQGSHIP+V   F NAPEGTS  AAT+  VG PL+  + LAN LL AL+ ES 
Sbjct: 1310 IPLSMRLFQGSHIPNVAVEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1369

Query: 121  SLTRQISELSDRRTVLDAIL 141
            SLTRQIS+L+DRRTVLDAIL
Sbjct: 1370 SLTRQISDLTDRRTVLDAIL 1389

[Close]

BLAST of IVF0024387 vs. NCBI nr
Match: TYK27414.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 3.47e-80
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV
Sbjct: 852 MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 911

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC
Sbjct: 912 IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 971

Query: 121 SLTRQISELSDRRTVLDAIL 140
           SLTRQISELSDRRTVLDAIL
Sbjct: 972 SLTRQISELSDRRTVLDAIL 991

[Close]

BLAST of IVF0024387 vs. NCBI nr
Match: KAA0062468.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 3.76e-80
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV
Sbjct: 859 MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 918

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC
Sbjct: 919 IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 978

Query: 121 SLTRQISELSDRRTVLDAIL 140
           SLTRQISELSDRRTVLDAIL
Sbjct: 979 SLTRQISELSDRRTVLDAIL 998

[Close]

BLAST of IVF0024387 vs. NCBI nr
Match: KAA0065488.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 1.03e-55
Identity = 104/140 (74.29%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           +G RVKVNVG+ IFNHLLRHV+TFAIHIPI FPR+LSGFIL+QQ TILT +D VG  PR+
Sbjct: 605 VGTRVKVNVGKFIFNHLLRHVDTFAIHIPICFPRLLSGFILSQQPTILTPLDTVGTTPRI 664

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IP+SMRLFQG HIPDV A F +AP GT AA AT  T+GQPL+LS+PLAN LL ALM ES 
Sbjct: 665 IPVSMRLFQGFHIPDVAAKFESAPGGTRAAIATYPTIGQPLVLSVPLANWLLQALMAESR 724

Query: 121 SLTRQISELSDRRTVLDAIL 140
           SLTRQISELSDR+TVLD +L
Sbjct: 725 SLTRQISELSDRQTVLDVVL 744

[Close]

BLAST of IVF0024387 vs. NCBI nr
Match: KAA0056262.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK05239.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 1.14e-53
Identity = 94/136 (69.12%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 5   VKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRVIPLS 64
           VKVNVGE IFNHLLRHV+TFAIHIPI FPRILS F+L++   ILT +D +G  PRV+PL+
Sbjct: 4   VKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSVFMLSKHSVILTPLDTIGTTPRVLPLT 63

Query: 65  MRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESCSLTR 124
           MRLFQGSHIPD++A F NAP GT   A  N T+GQPL+L +PL N LL A M ES SLTR
Sbjct: 64  MRLFQGSHIPDISAEFENAPRGTKTNA-INPTIGQPLVLFVPLVNHLLQASMAESRSLTR 123

Query: 125 QISELSDRRTVLDAIL 140
           QIS+LSDRRTVLD +L
Sbjct: 124 QISDLSDRRTVLDTVL 138

[Close]

BLAST of IVF0024387 vs. NCBI nr
Match: TYK07258.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (462), Expect = 1.35e-52
Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MGIRVKVNVGESIFNHLLRHVNTFAIHIPIFFPRILSGFILAQQQTILTLVDIVGPAPRV 60
           +G  VKVNVGE IFNHLLR+V+TFAI+IPI FPR+LSGFIL+QQ  ILTL+D+VG   R+
Sbjct: 291 VGTEVKVNVGEFIFNHLLRYVDTFAIYIPICFPRLLSGFILSQQPAILTLLDVVGTTLRI 350

Query: 61  IPLSMRLFQGSHIPDVTAAFANAPEGTSAAAATNSTVGQPLLLSIPLANCLLHALMVESC 120
           IPLS+RLF+G HIPDV A F NAP  T AAAAT+STVGQPL+L I L+N LL ALM ES 
Sbjct: 351 IPLSVRLFKGFHIPDVVAEFINAPGRTRAAAATHSTVGQPLVLFISLSNRLLQALMAESR 410

Query: 121 SLTRQISELSDRRTVLDAIL 140
           S TR IS+LSDRRTVLDA+L
Sbjct: 411 SHTRHISKLSDRRTVLDAVL 430

The following BLAST results are available for this feature:

BLAST of IVF0024387 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DV74	3.6e-68	100.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V4G0	3.6e-68	100.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7VCX5	2.0e-47	74.29	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3E3G2	5.6e-45	73.57	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SWY8	1.6e-44	72.86	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0024387 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27414.1	3.47e-80	100.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0062468.1	3.76e-80	100.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0065488.1	1.03e-55	74.29	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag...	[more]
KAA0056262.1	1.14e-53	69.12	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK05239.1 flocculat...	[more]
TYK07258.1	1.35e-52	71.43	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024387 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024387.1	IVF0024387.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane