IVF0024159 (gene) Melon (IVF77) v1

Overview


Name	IVF0024159
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr04: 16796795 .. 16797091 (-)
RNA-Seq Expression	IVF0024159
Synteny	IVF0024159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCATAACAAGTTCCAGTTTCACTTCAACTTCTTCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTGATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTATGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAGCATATGAGATATAG

mRNA sequence

ATGGACGCCATAACAAGTTCCAGTTTCACTTCAACTTCTTCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTGATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTATGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAGCATATGAGATATAG

Coding sequence (CDS)

ATGGACGCCATAACAAGTTCCAGTTTCACTTCAACTTCTTCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTGATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCATGTATGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAGCATATGAGATATAG

Protein sequence

MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

Homology

[Close]

BLAST of IVF0024159 vs. ExPASy TrEMBL
Match: A0A5A7SZT3 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00120 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.5e-44
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 99
          KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 99
          KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 99
          KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 620 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61  KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 99
           KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 680 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 717

[Close]

BLAST of IVF0024159 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 99
           KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 214

[Close]

BLAST of IVF0024159 vs. NCBI nr
Match: KAA0036682.1 (uncharacterized protein E6C27_scaffold510G00270 [Cucumis melo var. makuwa] >TYK03658.1 uncharacterized protein E5676_scaffold863G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 2.33e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98
          KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. NCBI nr
Match: KAA0045175.1 (uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (453), Expect = 3.58e-56
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIP LPDNPTMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPTLPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98
          KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. NCBI nr
Match: KAA0059855.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 1.37e-53
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98
          KAQKEKKTKKSKAKAC+FAAVS TIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVSFTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. NCBI nr
Match: TYK12703.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 1.51e-53
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
          MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 1  MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61 KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98
          KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 61 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 98

[Close]

BLAST of IVF0024159 vs. NCBI nr
Match: KAA0068197.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 1.08e-50
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQI 60
           MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI 98
           KAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEI 214

The following BLAST results are available for this feature:

BLAST of IVF0024159 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZT3	2.5e-44	100.00	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E2V7	1.2e-41	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	1.2e-41	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	1.2e-41	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	1.2e-41	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0024159 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036682.1	2.33e-60	100.00	uncharacterized protein E6C27_scaffold510G00270 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0045175.1	3.58e-56	94.90	uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa]	[more]
KAA0059855.1	1.37e-53	94.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12703.1	1.51e-53	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0068197.1	1.08e-50	95.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0024159 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 17..43 e-value: 2.0E-10 score: 40.2
None	No IPR available	PANTHER	PTHR35317:SF11	SUBFAMILY NOT NAMED	coord: 4..98
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024159.2	IVF0024159.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding