IVF0024108 (gene) Melon (IVF77) v1

Overview


Name	IVF0024108
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	glycine-rich protein 2-like
Location	chr01: 15273192 .. 15273809 (-)
RNA-Seq Expression	IVF0024108
Synteny	IVF0024108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAAGGGTTAGTGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGAGGTTATGGAGGCGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

mRNA sequence

ATGGGTGAAAGGGTTAGTGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGAGGTTATGGAGGCGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Coding sequence (CDS)

ATGGGTGAAAGGGTTAGTGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGAGGTTATGGAGGCGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Protein sequence

MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSGR

Homology

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BLAST of IVF0024108 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-51
Identity = 150/209 (71.77%), Postives = 162/209 (77.51%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DG
Sbjct: 6   GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSG-GGYGGGGGGGRGRRGGGGYGFNG 121
           R+KAVDVTGP  A+VQG RGGGGGGGG GGGGY  G GGYGGGG GG    GGG  G+ G
Sbjct: 66  RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125

Query: 122 GSGGGGRGGYGGGGGGY-GGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY- 181
           G G GG   YGGGGGGY GGGGYGGGG GGG  CFKCGE+GH ARDC QSG  GGG R+ 
Sbjct: 126 GGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFG 185

Query: 182 --GGGGGGGNCYSCGESGHFARECPSSGR 206
             GGGGGGG CY CGE GHFAREC S GR
Sbjct: 186 GGGGGGGGGGCYKCGEDGHFARECTSGGR 214

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BLAST of IVF0024108 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 123/213 (57.75%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGG 121
           R KA++V+GP  A VQG+ GGGG  GG         GG+GGGGG G G RGGG YG    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGG--------RGGFGGGGGRG-GGRGGGSYG---- 131

Query: 122 SGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDR 181
                 GGYGG G G      G GGGGG  +CFKCGE GHMAR+C Q G      GGG R
Sbjct: 132 ------GGYGGRGSG------GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGR 191

Query: 182 YGGGGGGG------NCYSCGESGHFARECPSSG 205
           YG GGGGG      +CYSCGESGHFAR+C S G
Sbjct: 192 YGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

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BLAST of IVF0024108 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-29
Identity = 128/219 (58.45%), Postives = 143/219 (65.30%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGG-----GGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGY 121
           R KA+DV+GP  A VQG+ GGG     GG GGG GGG  SGGGYGGGGGG  GR GGG  
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 G---FNGGSGG-------GGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDC 181
           G   +  G  G        G GGYGGGGGGYGGGG  GGGGGG                 
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGG----------------- 187

Query: 182 YQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSGR 206
                 GGG R GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 188 -----YGGGGR-GGGGGGGSCYSCGESGHFARDCTSGGR 203

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BLAST of IVF0024108 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-17
Identity = 112/213 (52.58%), Postives = 132/213 (61.97%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGGGGGGGGGGYSS----GGGYGGGGGGGRGRRGGGG 123
           KA++VT PG  S+      SRG GG     G  G+ +    GG  G   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGG- 129

Query: 124 YGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGG 183
               G     G  G+        GGG  GGGGGGG  C+ CGE GH+A+DC + GS  GG
Sbjct: 130 ---EGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GG 189

Query: 184 DRYGGGG----GGGNCYSCGESGHFARECPSSG 205
           +RYGGGG    GG  CY CG  GHFAR+C  +G
Sbjct: 190 NRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

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BLAST of IVF0024108 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 102/209 (48.80%), Postives = 125/209 (59.81%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGGGGGGYSSGG--------GYGGGGGGGRGRRG 123
           KAV+VT PG  S++    SRG G   GGGG G Y+ G         G GGGGGGG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
           GG   +N G      G +       G G   G   GG   C+ CG+ GH+ARDC Q  S 
Sbjct: 130 GGEGCYNCGD----TGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQK-SV 189

Query: 184 GGGDRYGG-GGGGGNCYSCGESGHFAREC 201
           G GD+ G   GG   CY+CG+ GHFAR+C
Sbjct: 190 GNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

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BLAST of IVF0024108 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.2e-82
Identity = 205/212 (96.70%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGG-GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGY-GGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGDR 180
           GGSGGGGRGGYGGGGGGYGGGGY GGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGDR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 Y----GGGGGGGNCYSCGESGHFARECPSSGR 206
           Y    GGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

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BLAST of IVF0024108 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.0e-80
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYG 131
           GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGYG
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 132 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 191
           GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

Query: 192 ESGHFARECPSSGR 206
           ESGHFARECPSSGR
Sbjct: 181 ESGHFARECPSSGR 194

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BLAST of IVF0024108 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.0e-71
Identity = 186/207 (89.86%), Postives = 190/207 (91.79%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGG   GGGY GGGGGGRGRR  GGYGFNG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGG--GGGGY-GGGGGGRGRR--GGYGFNG 120

Query: 121 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-- 180
           GSGGGGRG YGG GGG  GGGYG GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY  
Sbjct: 121 GSGGGGRGSYGGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSG 180

Query: 181 GGGGGGGNCYSCGESGHFARECPSSGR 206
           GGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 GGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of IVF0024108 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69
Identity = 187/212 (88.21%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG  GGG   GGGY GGGGGGRGRR  GGYGFNG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGG--GGGGY-GGGGGGRGRR--GGYGFNG 120

Query: 121 GSGGGGRGGYGG-GGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY- 180
           GSGGGGRG YGG GGGGYGGG   GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRY 
Sbjct: 121 GSGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYS 180

Query: 181 -----GGGGGGGNCYSCGESGHFARECPSSGR 206
                GGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 GGGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of IVF0024108 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 164/207 (79.23%), Postives = 169/207 (81.64%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNG 120
           GR KA+DVTGPGE+SVQGSRGG                  GGGGGG RG R GGGYGFNG
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGG------------------GGGGGGERGSR-GGGYGFNG 120

Query: 121 GSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-- 180
           G GGGGRGGYG GGGGY       GGGGGGG CFKCGETGHMARDCYQ GSQGGGDRY  
Sbjct: 121 G-GGGGRGGYGRGGGGY-------GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGG 180

Query: 181 GGGGGGGNCYSCGESGHFARECPSSGR 206
           GGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 GGGGGGGNCYSCGESGHFARDCQSSGR 180

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BLAST of IVF0024108 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 316 bits (810), Expect = 4.05e-107
Identity = 205/212 (96.70%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGG-GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGG-ACFKCGETGHMARDCYQSGSQGGG-DR 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGG ACFKCGETGHMARDCYQSGSQGGG DR
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDR 180

Query: 181 YGGGGGGG----NCYSCGESGHFARECPSSGR 205
           YGGGGGGG    NCYSCGESGHFARECPSSGR
Sbjct: 181 YGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of IVF0024108 vs. NCBI nr
Match: XP_008448117.2 (PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis melo])

HSP 1 Score: 310 bits (795), Expect = 4.17e-105
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYG 131
           GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRG RGGGGYGFNGGSGGGGRGGYG
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 132 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 191
           GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

Query: 192 ESGHFARECPSSGR 205
           ESGHFARECPSSGR
Sbjct: 181 ESGHFARECPSSGR 194

[Close]

BLAST of IVF0024108 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 310 bits (794), Expect = 8.37e-105
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGG-YGGGGGGGRGRRGGGGYGFN 120
           GRSKAVDVTGPGEASVQGSRGGG GGGGG    YSSGGG YGGGGGGGRGRRGGGGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGG----YSSGGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGG-ACFKCGETGHMARDCYQSGSQGGGDRY 180
           GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGG ACFKCGETGHMARDCYQSGSQGGGDRY
Sbjct: 121 GGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 180

Query: 181 GGGGGGG-NCYSCGESGHFARECPSSGR 205
           GGGGGGG NCYSCGESGHFARECPSSGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 204

[Close]

BLAST of IVF0024108 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (719), Expect = 2.05e-93
Identity = 187/212 (88.21%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGG----GGGGGYSSGGGYGGGGGGGRGRRGGGGY 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG    GGGGGY       GGGGGGRGRRGG  Y
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGY-------GGGGGGRGRRGG--Y 120

Query: 121 GFNGGSGGGGRGGYGG-GGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGG 180
           GFNGGSGGGGRG YGG GGGGYGGG YG GGGGGGGACFKCGE GHMARDCYQSGSQGGG
Sbjct: 121 GFNGGSGGGGRGSYGGSGGGGYGGG-YGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGG 180

Query: 181 DRY--GGGGGGGNCYSCGESGHFARECPSSGR 205
           DRY  GGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 DRYSGGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of IVF0024108 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281 bits (719), Expect = 2.05e-93
Identity = 187/212 (88.21%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGG----GGGGGYSSGGGYGGGGGGGRGRRGGGGY 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG    GGGGGY       GGGGGGRGRRGG  Y
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGTYGGGGGGGY-------GGGGGGRGRRGG--Y 120

Query: 121 GFNGGSGGGGRGGYGG-GGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGG 180
           GFNGGSGGGGRG YGG GGGGYGGG YG GGGGGGGACFKCGE GHMARDCYQSGSQGGG
Sbjct: 121 GFNGGSGGGGRGSYGGSGGGGYGGG-YGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGG 180

Query: 181 DRY--GGGGGGGNCYSCGESGHFARECPSSGR 205
           DRY  GGGGGGGNCYSCGESGHFARECPSSGR
Sbjct: 181 DRYSGGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of IVF0024108 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-37
Identity = 123/213 (57.75%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           G+R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGG 121
           R KA++V+GP  A VQG+ GGGG  GG         GG+GGGGG G G RGGG YG    
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGG--------RGGFGGGGGRG-GGRGGGSYG---- 131

Query: 122 SGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDR 181
                 GGYGG G G      G GGGGG  +CFKCGE GHMAR+C Q G      GGG R
Sbjct: 132 ------GGYGGRGSG------GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGR 191

Query: 182 YGGGGGGG------NCYSCGESGHFARECPSSG 205
           YG GGGGG      +CYSCGESGHFAR+C S G
Sbjct: 192 YGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of IVF0024108 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30
Identity = 128/219 (58.45%), Postives = 143/219 (65.30%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDG 61
           GER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGEASVQGSRGGG-----GGGGGGGGGGYSSGGGYGGGGGGGRGRRGGGGY 121
           R KA+DV+GP  A VQG+ GGG     GG GGG GGG  SGGGYGGGGGG  GR GGG  
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRG 127

Query: 122 G---FNGGSGG-------GGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDC 181
           G   +  G  G        G GGYGGGGGGYGGGG  GGGGGG                 
Sbjct: 128 GSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGG----------------- 187

Query: 182 YQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSGR 206
                 GGG R GGGGGGG+CYSCGESGHFAR+C S GR
Sbjct: 188 -----YGGGGR-GGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of IVF0024108 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-18
Identity = 112/213 (52.58%), Postives = 132/213 (61.97%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGEASV----QGSRGGGGGGGGGGGGGYSS----GGGYGGGGGGGRGRRGGGG 123
           KA++VT PG  S+      SRG GG     G  G+ +    GG  G   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGG- 129

Query: 124 YGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGG 183
               G     G  G+        GGG  GGGGGGG  C+ CGE GH+A+DC + GS  GG
Sbjct: 130 ---EGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GG 189

Query: 184 DRYGGGG----GGGNCYSCGESGHFARECPSSG 205
           +RYGGGG    GG  CY CG  GHFAR+C  +G
Sbjct: 190 NRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of IVF0024108 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-16
Identity = 102/209 (48.80%), Postives = 125/209 (59.81%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRS 63
           R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGEASVQ---GSRGGGGGGGGGGGGGYSSGG--------GYGGGGGGGRGRRG 123
           KAV+VT PG  S++    SRG G   GGGG G Y+ G         G GGGGGGG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQ 183
           GG   +N G      G +       G G   G   GG   C+ CG+ GH+ARDC Q  S 
Sbjct: 130 GGEGCYNCGD----TGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQK-SV 189

Query: 184 GGGDRYGG-GGGGGNCYSCGESGHFAREC 201
           G GD+ G   GG   CY+CG+ GHFAR+C
Sbjct: 190 GNGDQRGAVKGGNDGCYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of IVF0024108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	1.9e-51	71.77	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	1.1e-35	57.75	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	6.0e-29	58.45	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	4.0e-17	52.58	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.1e-14	48.80	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of IVF0024108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4M5	2.2e-82	96.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A1S3BIY4	2.0e-80	99.48	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1ERG9	3.0e-71	89.86	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1JLC0	1.2e-69	88.21	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A6J1GLV7	1.7e-63	79.23	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of IVF0024108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658593.1	4.05e-107	96.70	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_008448117.2	4.17e-105	99.48	PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis me...	[more]
XP_038888820.1	8.37e-105	95.67	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_022928350.1	2.05e-93	88.21	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_023529790.1	2.05e-93	88.21	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0024108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	8.1e-37	57.75	glycine-rich protein 2B	[more]
AT4G38680.1	4.3e-30	58.45	glycine rich protein 2	[more]
AT2G17870.1	2.9e-18	52.58	cold shock domain protein 3	[more]
AT4G36020.1	7.8e-16	48.80	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 43..61 score: 40.8 coord: 7..22 score: 63.69 coord: 28..37 score: 64.04
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 1.3E-24 score: 85.8
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 31.374826
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 4.80493E-26 score: 93.4121
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 186..202 e-value: 2.2E-5 score: 33.9 coord: 152..168 e-value: 1.4E-5 score: 34.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 186..202 e-value: 1.5E-7 score: 31.2 coord: 152..166 e-value: 2.3E-7 score: 30.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 153..166 score: 11.053757
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 187..202 score: 11.284516
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 6.1E-23 score: 92.2
None	No IPR available	GENE3D	4.10.60.10		coord: 148..177 e-value: 1.5E-7 score: 33.0 coord: 178..205 e-value: 2.7E-7 score: 32.1
None	No IPR available	GENE3D	2.40.50.140		coord: 2..81 e-value: 9.6E-28 score: 98.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..90
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..113
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..113 coord: 120..205
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 120..205
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 144..203
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024108.2	IVF0024108.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding