Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCAAAAGGAGACGTTTTGAACGTGCATTGTGTTCGACCATGCTCTGATATTTCTGACGACGAGTCATGTTATAATGATTGCATCCGAGAAAATCTTGGTGCTGGATTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGCTGCAATGTTTGA
mRNA sequence
ATGGTAGCAAAAGGAGACGTTTTGAACGTGCATTGTGTTCGACCATGCTCTGATATTTCTGACGACGAGTCATGTTATAATGATTGCATCCGAGAAAATCTTGGTGCTGGATTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGCTGCAATGTTTGA
Coding sequence (CDS)
ATGGTAGCAAAAGGAGACGTTTTGAACGTGCATTGTGTTCGACCATGCTCTGATATTTCTGACGACGAGTCATGTTATAATGATTGCATCCGAGAAAATCTTGGTGCTGGATTTTGTTACCCAAAGCTACCTAGCACCGATAAAGATTGTTGCTGCAATGTTTGA
Protein sequence
MVAKGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Homology
BLAST of IVF0023591 vs. ExPASy TrEMBL
Match:
A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0
Query: 1 MVAKGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
M AKGD+LNVHCVRPCSD DDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 1 MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54
BLAST of IVF0023591 vs. ExPASy TrEMBL
Match:
A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 3.9e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
Query: 4 KGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 55
KGDVLNVHCVRPCSD DDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 75
BLAST of IVF0023591 vs. ExPASy TrEMBL
Match:
A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0
Query: 4 KGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 54
KGDVLNVHCVRPC D DDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 74
BLAST of IVF0023591 vs. ExPASy TrEMBL
Match:
A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 5.3e-04
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 0
Query: 11 HCVRPCSDISDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 54
+CV PCS+ + D C CI ++ GAGFC PKLP S K CCCN
Sbjct: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75
BLAST of IVF0023591 vs. NCBI nr
Match:
KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])
HSP 1 Score: 114 bits (284), Expect = 1.49e-31
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
Query: 4 KGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54
KGDVLNVHCVRPCSD DDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 25 KGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 75
BLAST of IVF0023591 vs. NCBI nr
Match:
KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])
HSP 1 Score: 112 bits (281), Expect = 4.28e-31
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0
Query: 4 KGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54
KGDVLNV+CVRPCSD DDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 25 KGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 75
BLAST of IVF0023591 vs. NCBI nr
Match:
KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])
HSP 1 Score: 112 bits (280), Expect = 4.51e-31
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 0
Query: 1 MVAKGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCN 53
M+AKGDVLN+HCV+PCSD DDESCYNDCI+ENLGAGFCYPKLPSTDKDCCC+
Sbjct: 12 MIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKLPSTDKDCCCS 64
BLAST of IVF0023591 vs. NCBI nr
Match:
KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 82.0 bits (201), Expect = 6.87e-19
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0
Query: 3 AKGDVLNVHCVRPCSDISDDESCYNDCIRENLGAGFCYPKLPST--DKDCCCN 53
AKGD+ + C+RPC D DD+SCY+DC+R N GAGFCYPKLPS +KDCCCN
Sbjct: 23 AKGDMF-MECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 74
BLAST of IVF0023591 vs. NCBI nr
Match:
KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])
HSP 1 Score: 50.4 bits (119), Expect = 2.26e-06
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 0
Query: 11 HCVRPCSDISDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53
+CV PCS+ + D C CI ++ GAGFC PKLP S K CCCN
Sbjct: 31 NCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LKF5 | 1.6e-24 | 92.59 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1 | [more] |
| A0A0A0LHG9 | 3.9e-23 | 94.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1 | [more] |
| A0A0A0LJG5 | 2.5e-22 | 94.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1 | [more] |
| A0A0A0L1R8 | 5.3e-04 | 53.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN61228.1 | 1.49e-31 | 94.12 | hypothetical protein Csa_006463 [Cucumis sativus] | [more] |
| KAE8651697.1 | 4.28e-31 | 94.12 | hypothetical protein Csa_006343 [Cucumis sativus] | [more] |
| KAE8651701.1 | 4.51e-31 | 86.79 | hypothetical protein Csa_006400, partial [Cucumis sativus] | [more] |
| KAG6586428.1 | 6.87e-19 | 66.04 | hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN54497.1 | 2.26e-06 | 53.33 | hypothetical protein Csa_012842 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
