Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA
mRNA sequence
ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA
Coding sequence (CDS)
ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA
Protein sequence
MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKNVV
Homology
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match:
A0A5A7VEH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00120 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 5.9e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN
Sbjct: 88 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 147
Query: 61 VV 63
VV
Sbjct: 148 VV 149
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match:
A0A5D3CLH2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001220 PE=4 SV=1)
HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
MVDVTAEAT+ EMERKINFLMKVVEERDHEITAL +QM+T+EI ESSQTP+VKATDKGKN
Sbjct: 86 MVDVTAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKN 145
Query: 61 V 62
V
Sbjct: 146 V 146
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match:
A0A5A7TYE9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00410 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
M D+TAEA + EMERKINFLMKVVEERDHEITAL EQM+T E AESSQTPVVKATDKGKN
Sbjct: 63 MADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 122
Query: 61 VV 63
VV
Sbjct: 123 VV 124
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match:
A0A5D3DK07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00460 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
MVDVTAEAT+ EMERKINFLMKVVEERDHEI AL +QM+ +E AESSQTPVVKATDKGKN
Sbjct: 86 MVDVTAEATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGKN 145
Query: 61 VV 63
VV
Sbjct: 146 VV 147
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match:
A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 7.5e-18
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
M D+T EA I EMERK+NFLMKVVEERDHEIT L EQMQTHE +SSQTPVVKATDKGKN
Sbjct: 39 MADITVEAAIAEMERKVNFLMKVVEERDHEITTLREQMQTHETTKSSQTPVVKATDKGKN 98
Query: 61 VV 63
VV
Sbjct: 99 VV 100
BLAST of IVF0022725 vs. NCBI nr
Match:
KAA0063929.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11304.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 117 bits (292), Expect = 1.08e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN
Sbjct: 88 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 147
Query: 61 VV 62
VV
Sbjct: 148 VV 149
BLAST of IVF0022725 vs. NCBI nr
Match:
KAA0051467.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04154.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 97.8 bits (242), Expect = 4.22e-25
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
M D+T EAT+ EMERK+NFLMKVVEERDHEIT EQM+THE ESSQTP+VKATDKGKN
Sbjct: 5 MADITVEATMTEMERKVNFLMKVVEERDHEITISREQMRTHETVESSQTPIVKATDKGKN 64
Query: 61 VV 62
VV
Sbjct: 65 VV 66
BLAST of IVF0022725 vs. NCBI nr
Match:
KAA0048603.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27187.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (250), Expect = 4.47e-25
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
M D+TAEA + EMERKINFLMKVVEERDHEITAL EQM+T E AESSQTPVVKATDKGKN
Sbjct: 63 MADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 122
Query: 61 VV 62
VV
Sbjct: 123 VV 124
BLAST of IVF0022725 vs. NCBI nr
Match:
TYK11266.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 102 bits (255), Expect = 1.37e-24
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
MVDVTAEAT+ EMERKINFLMKVVEERDHEITAL +QM+T+EI ESSQTP+VKATDKGKN
Sbjct: 86 MVDVTAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKN 145
BLAST of IVF0022725 vs. NCBI nr
Match:
KAA0041105.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 97.1 bits (240), Expect = 1.95e-24
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 1 MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
M D+TA+A + EMERKINFLMKVVEERDHEITAL EQ++T E AESSQTP+VKATDKGKN
Sbjct: 5 MADITAKAAMVEMERKINFLMKVVEERDHEITALREQIRTRETAESSQTPIVKATDKGKN 64
Query: 61 VV 62
VV
Sbjct: 65 VV 66
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VEH1 | 5.9e-23 | 100.00 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3CLH2 | 1.2e-18 | 86.89 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TYE9 | 4.4e-18 | 85.48 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DK07 | 5.7e-18 | 85.48 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7UWX8 | 7.5e-18 | 82.26 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
KAA0063929.1 | 1.08e-31 | 100.00 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11304.1 ty3-gyp... | [more] |
KAA0051467.1 | 4.22e-25 | 79.03 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04154.1 ty3-gyp... | [more] |
KAA0048603.1 | 4.47e-25 | 85.48 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27187.1 ty3-gyp... | [more] |
TYK11266.1 | 1.37e-24 | 86.89 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041105.1 | 1.95e-24 | 80.65 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |