IVF0022725 (gene) Melon (IVF77) v1

Overview
NameIVF0022725
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr03: 12675797 .. 12675985 (+)
RNA-Seq ExpressionIVF0022725
SyntenyIVF0022725
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA

mRNA sequence

ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA

Coding sequence (CDS)

ATGGTAGATGTGACAGCTGAGGCAACCATAGAAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAACGAGATCATGAAATCACAGCTTTGATGGAGCAGATGCAGACTCATGAAATTGCTGAGTCAAGTCAAACTCCTGTTGTCAAAGCTACTGATAAAGGGAAAAATGTGGTGTAA

Protein sequence

MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKNVV
Homology
BLAST of IVF0022725 vs. ExPASy TrEMBL
Match: A0A5A7VEH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00120 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN
Sbjct: 88  MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 147

Query: 61  VV 63
           VV
Sbjct: 148 VV 149

BLAST of IVF0022725 vs. ExPASy TrEMBL
Match: A0A5D3CLH2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001220 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           MVDVTAEAT+ EMERKINFLMKVVEERDHEITAL +QM+T+EI ESSQTP+VKATDKGKN
Sbjct: 86  MVDVTAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKN 145

Query: 61  V 62
           V
Sbjct: 146 V 146

BLAST of IVF0022725 vs. ExPASy TrEMBL
Match: A0A5A7TYE9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00410 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           M D+TAEA + EMERKINFLMKVVEERDHEITAL EQM+T E AESSQTPVVKATDKGKN
Sbjct: 63  MADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 122

Query: 61  VV 63
           VV
Sbjct: 123 VV 124

BLAST of IVF0022725 vs. ExPASy TrEMBL
Match: A0A5D3DK07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00460 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           MVDVTAEAT+ EMERKINFLMKVVEERDHEI AL +QM+ +E AESSQTPVVKATDKGKN
Sbjct: 86  MVDVTAEATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGKN 145

Query: 61  VV 63
           VV
Sbjct: 146 VV 147

BLAST of IVF0022725 vs. ExPASy TrEMBL
Match: A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.5e-18
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           M D+T EA I EMERK+NFLMKVVEERDHEIT L EQMQTHE  +SSQTPVVKATDKGKN
Sbjct: 39  MADITVEAAIAEMERKVNFLMKVVEERDHEITTLREQMQTHETTKSSQTPVVKATDKGKN 98

Query: 61  VV 63
           VV
Sbjct: 99  VV 100

BLAST of IVF0022725 vs. NCBI nr
Match: KAA0063929.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11304.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.08e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN
Sbjct: 88  MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 147

Query: 61  VV 62
           VV
Sbjct: 148 VV 149

BLAST of IVF0022725 vs. NCBI nr
Match: KAA0051467.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04154.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.22e-25
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
          M D+T EAT+ EMERK+NFLMKVVEERDHEIT   EQM+THE  ESSQTP+VKATDKGKN
Sbjct: 5  MADITVEATMTEMERKVNFLMKVVEERDHEITISREQMRTHETVESSQTPIVKATDKGKN 64

Query: 61 VV 62
          VV
Sbjct: 65 VV 66

BLAST of IVF0022725 vs. NCBI nr
Match: KAA0048603.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27187.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 4.47e-25
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           M D+TAEA + EMERKINFLMKVVEERDHEITAL EQM+T E AESSQTPVVKATDKGKN
Sbjct: 63  MADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 122

Query: 61  VV 62
           VV
Sbjct: 123 VV 124

BLAST of IVF0022725 vs. NCBI nr
Match: TYK11266.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 1.37e-24
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 0

Query: 1   MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
           MVDVTAEAT+ EMERKINFLMKVVEERDHEITAL +QM+T+EI ESSQTP+VKATDKGKN
Sbjct: 86  MVDVTAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKN 145

BLAST of IVF0022725 vs. NCBI nr
Match: KAA0041105.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.95e-24
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MVDVTAEATIEEMERKINFLMKVVEERDHEITALMEQMQTHEIAESSQTPVVKATDKGKN 60
          M D+TA+A + EMERKINFLMKVVEERDHEITAL EQ++T E AESSQTP+VKATDKGKN
Sbjct: 5  MADITAKAAMVEMERKINFLMKVVEERDHEITALREQIRTRETAESSQTPIVKATDKGKN 64

Query: 61 VV 62
          VV
Sbjct: 65 VV 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEH15.9e-23100.00Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CLH21.2e-1886.89Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TYE94.4e-1885.48Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DK075.7e-1885.48Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UWX87.5e-1882.26Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAA0063929.11.08e-31100.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11304.1 ty3-gyp... [more]
KAA0051467.14.22e-2579.03ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04154.1 ty3-gyp... [more]
KAA0048603.14.47e-2585.48ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27187.1 ty3-gyp... [more]
TYK11266.11.37e-2486.89ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041105.11.95e-2480.65ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022725.2IVF0022725.2mRNA