IVF0021773 (gene) Melon (IVF77) v1

Overview


Name	IVF0021773
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pectinesterase
Location	chr04: 30390112 .. 30390306 (-)
RNA-Seq Expression	IVF0021773
Synteny	IVF0021773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGGGATGTAGGATCAAATCAATACCAAAGGAAGTGTTGCGTGGTGGGGTGAGTGGAGCCATCACACCTCTGGGAAGGCAAACAAGAAGTGAGGAAATTGGTTTTGCTTTCATCAATTGCACCAATAGTGGCGCTGGGAAGGTGTGGCTTGGTCGTGCTTGGGCACTTGTGCACTGTCGTATTCTCTAA

mRNA sequence

ATGGTTCAGGGATGTAGGATCAAATCAATACCAAAGGAAGTGTTGCGTGGTGGGGTGAGTGGAGCCATCACACCTCTGGGAAGGCAAACAAGAAGTGAGGAAATTGGTTTTGCTTTCATCAATTGCACCAATAGTGGCGCTGGGAAGGTGTGGCTTGGTCGTGCTTGGGCACTTGTGCACTGTCGTATTCTCTAA

Coding sequence (CDS)

ATGGTTCAGGGATGTAGGATCAAATCAATACCAAAGGAAGTGTTGCGTGGTGGGGTGAGTGGAGCCATCACACCTCTGGGAAGGCAAACAAGAAGTGAGGAAATTGGTTTTGCTTTCATCAATTGCACCAATAGTGGCGCTGGGAAGGTGTGGCTTGGTCGTGCTTGGGCACTTGTGCACTGTCGTATTCTCTAA

Protein sequence

MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVHCRIL

Homology

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BLAST of IVF0021773 vs. ExPASy Swiss-Prot
Match: O23038 (Probable pectinesterase 8 OS=Arabidopsis thaliana OX=3702 GN=PME8 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-09
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRG--GVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q CRI S+  ++  G   V+GA+T  GR ++ E  GF+F+NCT  G G VWLGRAW
Sbjct: 253 LYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAW 310

[Close]

BLAST of IVF0021773 vs. ExPASy Swiss-Prot
Match: Q9ZQA3 (Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-08
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q C I SI K     GV+G+IT  GRQ+  E+ GF+F+NC   G+G++ LGRAW
Sbjct: 253 LYQDCTINSIAKG-NTSGVTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAW 307

[Close]

BLAST of IVF0021773 vs. ExPASy Swiss-Prot
Match: Q9ZQA4 (Putative pectinesterase 14 OS=Arabidopsis thaliana OX=3702 GN=PME14 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + + C + SI KE       G IT  G+ T  +  GF F+NC  +G+ +VWLGRAW
Sbjct: 204 LYEDCTLHSIAKE----NTIGCITANGKDTLKDRTGFVFVNCKITGSARVWLGRAW 255

[Close]

BLAST of IVF0021773 vs. ExPASy Swiss-Prot
Match: Q9FM79 (Pectinesterase QRT1 OS=Arabidopsis thaliana OX=3702 GN=QRT1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q C I S  K        GAI    R + +E+ GF+F+NC  SG G+++LGRAW
Sbjct: 251 LYQDCDIHSTAKRY------GAIAAHHRDSETEDTGFSFVNCDISGTGQIYLGRAW 300

[Close]

BLAST of IVF0021773 vs. ExPASy Swiss-Prot
Match: Q8VYZ3 (Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-05
Identity = 20/56 (35.71%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + +GC + +I  ++      GA+T  GR +  E+ GF+F+ C  +G G ++LGRAW
Sbjct: 254 LYEGCHVHAIADKL------GAVTAQGRSSVLEDTGFSFVKCKVTGTGVLYLGRAW 303

[Close]

BLAST of IVF0021773 vs. ExPASy TrEMBL
Match: A0A5D3DNL9 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003100 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH 60
           ++    IKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH
Sbjct: 571 LISSSMIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH 630

Query: 61  CRIL 65
           CRIL
Sbjct: 631 CRIL 634

[Close]

BLAST of IVF0021773 vs. ExPASy TrEMBL
Match: A0A1S4DUI5 (F-box/kelch-repeat protein At3g23880-like OS=Cucumis melo OX=3656 GN=LOC103487139 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK 50
          MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK
Sbjct: 1  MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK 49

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BLAST of IVF0021773 vs. ExPASy TrEMBL
Match: A0A5D3DNS7 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003080 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 264 LYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAW 319

[Close]

BLAST of IVF0021773 vs. ExPASy TrEMBL
Match: A0A5A7TM68 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003030 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 312 LYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAW 367

[Close]

BLAST of IVF0021773 vs. ExPASy TrEMBL
Match: A0A1S3B6F5 (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103486534 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 264 LYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAW 319

[Close]

BLAST of IVF0021773 vs. NCBI nr
Match: TYK25184.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 3.30e-31
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH 60
           ++    IKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH
Sbjct: 571 LISSSMIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAWALVH 630

Query: 61  CRIL 64
           CRIL
Sbjct: 631 CRIL 634

[Close]

BLAST of IVF0021773 vs. NCBI nr
Match: XP_016899646.1 (PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis melo])

HSP 1 Score: 102 bits (254), Expect = 1.99e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK 49
          MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK
Sbjct: 1  MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGK 49

[Close]

BLAST of IVF0021773 vs. NCBI nr
Match: XP_008442748.1 (PREDICTED: putative pectinesterase 14 isoform X1 [Cucumis melo] >TYK25182.1 putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 5.94e-22
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 56
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 264 LYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAW 319

[Close]

BLAST of IVF0021773 vs. NCBI nr
Match: KAA0043958.1 (putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.15e-22
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 56
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 312 LYDGCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAW 367

[Close]

BLAST of IVF0021773 vs. NCBI nr
Match: XP_004137990.1 (putative pectinesterase 14 [Cucumis sativus] >KGN59019.1 hypothetical protein Csa_000744 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 8.24e-22
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 56
           +  GCRIKSI KEVL GGVSGAIT  GRQTRSEE GFAFINCT SG+GKVWLGRAW
Sbjct: 264 LYDGCRIKSIAKEVLGGGVSGAITAHGRQTRSEETGFAFINCTISGSGKVWLGRAW 319

[Close]

BLAST of IVF0021773 vs. TAIR 10
Match: AT1G05310.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 9.0e-11
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRG--GVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q CRI S+  ++  G   V+GA+T  GR ++ E  GF+F+NCT  G G VWLGRAW
Sbjct: 253 LYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAW 310

[Close]

BLAST of IVF0021773 vs. TAIR 10
Match: AT2G36710.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q C I SI K     GV+G+IT  GRQ+  E+ GF+F+NC   G+G++ LGRAW
Sbjct: 253 LYQDCTINSIAKG-NTSGVTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAW 307

[Close]

BLAST of IVF0021773 vs. TAIR 10
Match: AT2G36700.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 9.3e-08
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + + C + SI KE       G IT  G+ T  +  GF F+NC  +G+ +VWLGRAW
Sbjct: 204 LYEDCTLHSIAKE----NTIGCITANGKDTLKDRTGFVFVNCKITGSARVWLGRAW 255

[Close]

BLAST of IVF0021773 vs. TAIR 10
Match: AT5G55590.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + Q C I S  K        GAI    R + +E+ GF+F+NC  SG G+++LGRAW
Sbjct: 251 LYQDCDIHSTAKRY------GAIAAHHRDSETEDTGFSFVNCDISGTGQIYLGRAW 300

[Close]

BLAST of IVF0021773 vs. TAIR 10
Match: AT5G19730.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-06
Identity = 20/56 (35.71%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 1   MVQGCRIKSIPKEVLRGGVSGAITPLGRQTRSEEIGFAFINCTNSGAGKVWLGRAW 57
           + +GC + +I  ++      GA+T  GR +  E+ GF+F+ C  +G G ++LGRAW
Sbjct: 254 LYEGCHVHAIADKL------GAVTAQGRSSVLEDTGFSFVKCKVTGTGVLYLGRAW 303

The following BLAST results are available for this feature:

BLAST of IVF0021773 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23038	1.3e-09	48.28	Probable pectinesterase 8 OS=Arabidopsis thaliana OX=3702 GN=PME8 PE=2 SV=2	[more]
Q9ZQA3	3.1e-08	48.21	Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1	[more]
Q9ZQA4	1.3e-06	41.07	Putative pectinesterase 14 OS=Arabidopsis thaliana OX=3702 GN=PME14 PE=2 SV=1	[more]
Q9FM79	2.5e-05	41.07	Pectinesterase QRT1 OS=Arabidopsis thaliana OX=3702 GN=QRT1 PE=2 SV=1	[more]
Q8VYZ3	5.5e-05	35.71	Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1	[more]

BLAST of IVF0021773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNL9	1.0e-25	90.63	Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu...	[more]
A0A1S4DUI5	3.1e-19	100.00	F-box/kelch-repeat protein At3g23880-like OS=Cucumis melo OX=3656 GN=LOC10348713...	[more]
A0A5D3DNS7	1.3e-17	82.14	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00308...	[more]
A0A5A7TM68	1.3e-17	82.14	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00303...	[more]
A0A1S3B6F5	1.3e-17	82.14	Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103486534 PE=4 SV=1	[more]

BLAST of IVF0021773 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25184.1	3.30e-31	90.63	serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi...	[more]
XP_016899646.1	1.99e-24	100.00	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cucumis melo]	[more]
XP_008442748.1	5.94e-22	82.14	PREDICTED: putative pectinesterase 14 isoform X1 [Cucumis melo] >TYK25182.1 puta...	[more]
KAA0043958.1	8.15e-22	82.14	putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_004137990.1	8.24e-22	82.14	putative pectinesterase 14 [Cucumis sativus] >KGN59019.1 hypothetical protein Cs...	[more]

BLAST of IVF0021773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05310.1	9.0e-11	48.28	Pectin lyase-like superfamily protein	[more]
AT2G36710.1	2.2e-09	48.21	Pectin lyase-like superfamily protein	[more]
AT2G36700.1	9.3e-08	41.07	Pectin lyase-like superfamily protein	[more]
AT5G55590.1	1.8e-06	41.07	Pectin lyase-like superfamily protein	[more]
AT5G19730.1	3.9e-06	35.71	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..62 e-value: 5.6E-6 score: 27.6
None	No IPR available	PANTHER	PTHR31321:SF73	PECTINESTERASE 14-RELATED	coord: 3..57
None	No IPR available	PANTHER	PTHR31321	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	coord: 3..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021773.1	IVF0021773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0045490	pectin catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045330	aspartyl esterase activity
molecular_function	GO:0030599	pectinesterase activity