IVF0021553 (gene) Melon (IVF77) v1

Overview
NameIVF0021553
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
Locationchr01: 31697386 .. 31700391 (+)
RNA-Seq ExpressionIVF0021553
SyntenyIVF0021553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATTTAGAAGAAAAAAAAAAACCTAAAAATCAAATCTTGTGGTGGAGACCGAGGGAAGAAGCCACCAACGCCTTATCTTTCTAGAGGTTCGTCAATCCAAGGCCAGGAATTCCAATTAATTCCAAATTCTCGACTTAATTTTTGATTTGGGTGTCTAAATTTGAGCTCAAAGTTCATTGATTTCACCTTCTACTCACTAATCATGGCTTCCATTGTTGCTACTCTACCTCCGCCATTGTTGGCGCCCCGCAAAAGCTTTACTATTTTGAACATTTCTCAGAAGCTCTCTGTTTTATCCACTGCTAGTAAGTTTATCACTCGATTCTATCCGATCATATTGTTGAATTTATCCTCCGTTGAAATTGATGTCCGTTCGATCGTGTTTATTTTTGAGCTGCATTTCTTATAACTACTGTGCATGGGTTTGAATTTTGAACTAAAGGGGTTATTTGGATTTGATGCTTGAAAGCTATTGTAGCAGGAGTTTAGGCCTTAGTGAGAAATGGGGCTTGTAGTTGTGCTAGAAAATGGTGATTGCTACTCTTTTAAGACATGGCCTAGAGGATGTGGAGATGAAGAGGGTATCTGTTTATTGGTTTGGAACTTTTGAATCTTCAAATTTAGAGATTTTGCACAATTGATTGTTGATATTGAAGATAGAAATATCTGTATTGGTAAATAATCCTCTCCAACATTTGGAAGCTTCACATTTCTTGAACCATTTCTTCATAGAAGAAACCTTTGGAACTTCCTTCTAGACTTGAATTCAATTTTCAGGATGAAAGGAATCAGCACTGGTATTTTATTGTCACTAAACAAAAGTAGTAACCTGTGCACCTTAATTGTAGGTAGTAGCCTAGACAATTTGAGAGTGCTAGCTTGTTTCCATACACTAACATTGACAATTTACCTCACAACAACTCGCTTCCACAATCCTTTTAGGTCTGTTTACAGCAGACTATTGTAGGGATTAGGAGTTTCTCGTCACAGCTTCGGGTGGTTGGTACTGACATCCCTATTTGGTAAAAGTTTCATTGATGTCTGAAATTAGGGGAGAACCCAAAATGTTTGGTGAAAGGGAAAAGAAATAAGTTATTGTGAAATGTTTGGAAATTTGCATTCAAATTGTTACAGTTTCTTTATATGAAGATTTCAAGGTTATGCGTAAAATCTGCTAAATATAATTTCCTGCTTCCTAGCCATCTATTGTAGGCAATATTTTGGAATGGCACCTCTTTGTAACTTCATGCAACTAATTGGAGTTCTCCATATCTTGTTCATCATACTACTTCTTGTTAGTAAATAGTTTATCAAAGGTTCAAAATTGCAGAAGGACGTTGTGGCAATGTTGTTGTAAAGGCTGTCGGAGGCAGCTCTGAGTCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTGTAAGCACTTCATTTCTTTTTCCCTCTTTCTTTACATTCTGTGGATGACAAATTTTACCTTAATCTTATGAGTATTTATAGTTTGTTTTTGGTGTGTTCTAGTTTGATCAATAAAAATGCCAACGAAACCATAATCAAACTCATTAAGCTATATCTTCTAGAGTAAGAGGTCTGTAGCTTGAATCACATTAGTTCCACTTATAGTCAAAACGCATAAAATAATAAATATAATAACTTTCATGCGAGCAATGATACTGTAAATATACTTCTAAAATCTACAAAGGGAAGGTTAATTAAAACTTTGATATTTGATTGAAGGTTCTATAGATTAAATATAGACTAAAAATAGAACAGAAATGATATTGTAAGCGTATATGTTTCTGGTTAACTTGGAACAGTGGGATCAACCTGAAGACCGATTCGCACTTTTCGGCCTGGGATTTGCAGCTGTAGCAACTGCATGGACAGCAACAAATCTTGTTACGGTAAATCTAAAAACAATGACCTATTTGGACAAATGAGAGACAAGATAATCACATAGCACGTGGAATTTTCAACCATGTCAGTGATTCCTCATGTTTTTTTCCTTTCATCTTCATCTCATTAACTTGTTTATTCTCATTTGCTGCTTGTAGGCCATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAGCACTGGTTTCTTGGGTAAGTAACAACATATATATCAACAACTTCTCTAAAACCATGGTTTTCTCTCCTTACAACTTCCATTACTGACCAATGTTTTTGTTCTCCACTATCAATTCCAGTGGTTTGTGTATCGCTACCTCCTGTTCAAGCCAAATCGGTAAAGCAAAATCGAGTAGTTTTTCTTCATTTGGTTTACATATGAAGTATTTTCGACATTTTCGCTGTCTTTAGCTTGTCGTTGTGAAATGACATTTTGTTGTAGTAAACAAACTTGAACTGACTTGTGTGTCTTTTTCACTGCAGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATATTAGATGTATTTGGACAGTAAAATTGGCCGATTTGGACCAATCTTCATTATATTCCATTCTTTTTTACAAAGTAATGATAATGAAAGAGGGTTGGTCCCATTCAACAGTCAAGTGTGAATTTTTTAATCAAGGTTGGTGTTTTGTTCATCAATGTATTGCAATCCCAAATCTTCAATCTCTGCAGTCTATGTTTATGTTTCAAAATTTCAACACTTTATTTGTTAGGATTTAGAAAGACGTTGCATACCCGCAATGTTATGGGTTTGTAATTCAAAATCTATGTTTTGATTGACCTTACCAGGTTTGGTTTGTAATATAAACTAGAGGTACAAGGAAAAACCACTCTAACCGACCAAAATCGTTTGTTAGTTTGGATTGAAATCGGTTGATTTGGCGGTTTCGGTTGAAAATATGTCAAAGTTGAGAAGTTGTGGTTGGGTTTGTGAGAAAAAAATATGTGGAAAACCGAAACGGCCGCTAAAACATATGCAATAAAATAACTAGTTCCGTTGAAAGTTGTTTTAATTTTAAATAAATATAAAATGTGTTGCATACTTTCC

mRNA sequence

CAAAATTTAGAAGAAAAAAAAAAACCTAAAAATCAAATCTTGTGGTGGAGACCGAGGGAAGAAGCCACCAACGCCTTATCTTTCTAGAGGTTCGTCAATCCAAGGCCAGGAATTCCAATTAATTCCAAATTCTCGACTTAATTTTTGATTTGGGTGTCTAAATTTGAGCTCAAAGTTCATTGATTTCACCTTCTACTCACTAATCATGGCTTCCATTGTTGCTACTCTACCTCCGCCATTGTTGGCGCCCCGCAAAAGCTTTACTATTTTGAACATTTCTCAGAAGCTCTCTGTTTTATCCACTGCTAAAGGACGTTGTGGCAATGTTGTTGTAAAGGCTGTCGGAGGCAGCTCTGAGTCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGACCGATTCGCACTTTTCGGCCTGGGATTTGCAGCTGTAGCAACTGCATGGACAGCAACAAATCTTGTTACGGCCATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAGCACTGGTTTCTTGGTGGTTTGTGTATCGCTACCTCCTGTTCAAGCCAAATCGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATATTAGATGTATTTGGACAGTAAAATTGGCCGATTTGGACCAATCTTCATTATATTCCATTCTTTTTTACAAAGTAATGATAATGAAAGAGGGTTGGTCCCATTCAACAGTCAAGTGTGAATTTTTTAATCAAGGTTGGTGTTTTGTTCATCAATGTATTGCAATCCCAAATCTTCAATCTCTGCAGTCTATGTTTATGTTTCAAAATTTCAACACTTTATTTGTTAGGATTTAGAAAGACGTTGCATACCCGCAATGTTATGGGTTTGTAATTCAAAATCTATGTTTTGATTGACCTTACCAGGTTTGGTTTGTAATATAAACTAGAGGTACAAGGAAAAACCACTCTAACCGACCAAAATCGTTTGTTAGTTTGGATTGAAATCGGTTGATTTGGCGGTTTCGGTTGAAAATATGTCAAAGTTGAGAAGTTGTGGTTGGGTTTGTGAGAAAAAAATATGTGGAAAACCGAAACGGCCGCTAAAACATATGCAATAAAATAACTAGTTCCGTTGAAAGTTGTTTTAATTTTAAATAAATATAAAATGTGTTGCATACTTTCC

Coding sequence (CDS)

ATGGCTTCCATTGTTGCTACTCTACCTCCGCCATTGTTGGCGCCCCGCAAAAGCTTTACTATTTTGAACATTTCTCAGAAGCTCTCTGTTTTATCCACTGCTAAAGGACGTTGTGGCAATGTTGTTGTAAAGGCTGTCGGAGGCAGCTCTGAGTCTTCTACTTCCCTTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGACCGATTCGCACTTTTCGGCCTGGGATTTGCAGCTGTAGCAACTGCATGGACAGCAACAAATCTTGTTACGGCCATTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAGCACTGGTTTCTTGGTGGTTTGTGTATCGCTACCTCCTGTTCAAGCCAAATCGGGAAGAGCTTTTGCAGATAATCAACAAGTCAATATTAGATGTATTTGGACAGTAA

Protein sequence

MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYRYLLFKPNREELLQIINKSILDVFGQ
Homology
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BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-33
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 0 

Query: 1   MASIVATLPPP-LLAPRKS---------FTILNISQKLSVLSTAKGRCG-NVVVKAVGGS 60
           MASI ATLP P LL  RKS         F++   +  LS LS  +     +++VKA G S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 120
           S+SST LD++ +++NVWD+ EDR  L GLGFA +   W + NL+TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFGQ 146
           G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

[Close]
BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-17
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 50  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 109
           +E++   +I+K+ +  W++ +D++A+  L FA V   W +  +++AID+LPL+PGVLE +
Sbjct: 78  AETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELV 137

Query: 110 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFG 145
           G   + WF Y+ L+FKP+RE L + +  +  D+ G
Sbjct: 138 GIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

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BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-12
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 10  PPLLAPRKSFTIL------NISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLD---IIK 69
           PP    R SFT+       N  QK+ +L T               SSE ++S+D   +I 
Sbjct: 32  PPRSFGRSSFTVPLKLVSGNGLQKVELLKTR-------------ASSEETSSIDTNELIT 91

Query: 70  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 129
            ++  WD  E++  +   G  A+   W ++ +V AI+ +PLLP V+E +G   + WFVYR
Sbjct: 92  DLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYR 151

Query: 130 YLLFKPNREELLQII 136
           YLLFK +R+EL + I
Sbjct: 152 YLLFKSSRKELAEDI 153

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BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 28/84 (33.33%), Postives = 46/84 (54.76%), Query Frame = 0 

Query: 62  VRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYRY 121
           +  ++ Q + +  LFG     + T      ++ A+D +P+L  + E IG +   WFVYRY
Sbjct: 796 INQLYQQYQGQLKLFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRY 855

Query: 122 LLFKPNREELLQIINKSILDVFGQ 146
           LL + NR+ELL  I     ++FG+
Sbjct: 856 LLKRSNRQELLDKIENIKREIFGK 879

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BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.6e-06
Identity = 27/101 (26.73%), Postives = 54/101 (53.47%), Query Frame = 0 

Query: 44  KAVGGSSESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLP 103
           +A     E + +L+ +  ++   D+    +++   G  A+   +  + +V++++ +PL P
Sbjct: 92  EAPQAEDEETQALEFLNDIKLDSDK---TYSILLYGSGAIVALYLTSAIVSSLEAIPLFP 151

Query: 104 GVLEFIGALVSWWFVYRYLLFKPNREELLQIINKSILDVFG 145
            ++E +G   + WF  RYLLFK NREEL   +++    V G
Sbjct: 152 KLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLG 189

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BLAST of IVF0021553 vs. ExPASy TrEMBL
Match: A0A5D3BWY3 (Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002150 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.0e-73
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 146
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. ExPASy TrEMBL
Match: A0A1S3CHU0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500595 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDRFALFGLGFAAVATAWTATNLV AIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVMAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 146
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. ExPASy TrEMBL
Match: A0A0A0KC66 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSV STA GR GNVVVKAVGGSSESSTSLDI+K
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIVK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDR ALFGLGFAAVATAWTATN+VTAIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 146
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. ExPASy TrEMBL
Match: A0A6J1KFS9 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494666 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 117/145 (80.69%), Postives = 124/145 (85.52%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASI ATLPPPLLAP KSF  L   QK++V   AKGR  N +VKA+G SSESSTS+DIIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDR  LFGLGFAAV  AWTATNLVTA+DKLPLLPGVLEFIG LVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 146
           YLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 YLLFKPNREELLQIINKSVADVLGQ 145

[Close]
BLAST of IVF0021553 vs. ExPASy TrEMBL
Match: A0A6J1HLG0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464586 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.6e-57
Identity = 117/146 (80.14%), Postives = 125/146 (85.62%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFT-ILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDII 60
           MASI ATLPPPLLAP KSFT +    +KL+V   AKGR  N +VKA+G SSESSTS+DII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVY 120
           KSVRNVWDQPEDR  LFGLGFAAV  AWTATNLVTA+DKLPLLPGVLEFIG LVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSILDVFGQ 146
           RYLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 146

[Close]
BLAST of IVF0021553 vs. NCBI nr
Match: KAA0059311.1 (protein CURVATURE THYLAKOID 1C [Cucumis melo var. makuwa] >TYK04017.1 protein CURVATURE THYLAKOID 1C [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 3.90e-97
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 145
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. NCBI nr
Match: XP_008462170.1 (PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis melo])

HSP 1 Score: 283 bits (725), Expect = 3.20e-96
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDRFALFGLGFAAVATAWTATNLV AIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVMAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 145
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. NCBI nr
Match: XP_004141763.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus] >KGN45386.1 hypothetical protein Csa_015763 [Cucumis sativus])

HSP 1 Score: 275 bits (702), Expect = 1.03e-92
Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFTILNISQKLSV STA GR GNVVVKAVGGSSESSTSLDI+K
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIVK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDR ALFGLGFAAVATAWTATN+VTAIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 145
           YLLFKPNREELLQIINKSILDVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSILDVFGQ 145

[Close]
BLAST of IVF0021553 vs. NCBI nr
Match: XP_038897597.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida])

HSP 1 Score: 261 bits (667), Expect = 2.24e-87
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASIVATLPPPLLAPRKSFT+LN SQKL+    A  R GNVVVKAVGGSSESSTSLDIIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTLLNTSQKLTAFPIANRRSGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDR ALFGLGFAAVAT WTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATVWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 145
           YLLFKPNREELLQIINKSI+DVFGQ
Sbjct: 121 YLLFKPNREELLQIINKSIIDVFGQ 145

[Close]
BLAST of IVF0021553 vs. NCBI nr
Match: XP_023000405.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima])

HSP 1 Score: 233 bits (594), Expect = 3.01e-76
Identity = 117/145 (80.69%), Postives = 124/145 (85.52%), Query Frame = 0 

Query: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60
           MASI ATLPPPLLAP KSF  L   QK++V   AKGR  N +VKA+G SSESSTS+DIIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVYR 120
           SVRNVWDQPEDR  LFGLGFAAV  AWTATNLVTA+DKLPLLPGVLEFIG LVSWWFVYR
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVYR 120

Query: 121 YLLFKPNREELLQIINKSILDVFGQ 145
           YLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 YLLFKPNREELLQIINKSVADVLGQ 145

[Close]
BLAST of IVF0021553 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-34
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 0 

Query: 1   MASIVATLPPP-LLAPRKS---------FTILNISQKLSVLSTAKGRCG-NVVVKAVGGS 60
           MASI ATLP P LL  RKS         F++   +  LS LS  +     +++VKA G S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 120
           S+SST LD++ +++NVWD+ EDR  L GLGFA +   W + NL+TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFGQ 146
           G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

[Close]
BLAST of IVF0021553 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-32
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 0 

Query: 1   MASIVATLPPP-LLAPRKS---------FTILNISQKLSVLSTAKGRCG-NVVVKAVGGS 60
           MASI ATLP P LL  RKS         F++   +  LS LS  +     +++VKA G S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 120
           S+SST LD++ +++N WD+ EDR  L GLGFA +   W + NL+TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFGQ 146
           G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 155

[Close]
BLAST of IVF0021553 vs. TAIR 10
Match: AT1G52220.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 251 Blast hits to 251 proteins in 43 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-18
Identity = 61/156 (39.10%), Postives = 83/156 (53.21%), Query Frame = 0 

Query: 1   MASIVATLPPP-LLAPRKS---------FTILNISQKLSVLSTAKGRCG-NVVVKAVGGS 60
           MASI ATLP P LL  RKS         F++   +  LS LS  +     +++VKA G S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 120
           S+SST LD++ +++NV                             AIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNV-----------------------------AIDKLPVISSGFELV 120

Query: 121 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFGQ 146
           G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 127

[Close]
BLAST of IVF0021553 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-18
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 50  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 109
           +E++   +I+K+ +  W++ +D++A+  L FA V   W +  +++AID+LPL+PGVLE +
Sbjct: 78  AETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELV 137

Query: 110 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFG 145
           G   + WF Y+ L+FKP+RE L + +  +  D+ G
Sbjct: 138 GIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

[Close]
BLAST of IVF0021553 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-18
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 50  SESSTSLDIIKSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFI 109
           +E++   +I+K+ +  W++ +D++A+  L FA V   W +  +++AID+LPL+PGVLE +
Sbjct: 78  AETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELV 137

Query: 110 GALVSWWFVYRYLLFKPNREELLQIINKSILDVFG 145
           G   + WF Y+ L+FKP+RE L + +  +  D+ G
Sbjct: 138 GIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

The following BLAST results are available for this feature:
BLAST of IVF0021553 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M8126.4e-3348.72Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q8LCA18.3e-1736.84Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O046166.2e-1234.81Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q119Z52.1e-0733.33Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=... [more]
Q8LDD36.6e-0626.73Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of IVF0021553 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BWY35.0e-73100.00Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CHU02.5e-7299.31protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1035... [more]
A0A0A0KC661.2e-6995.86CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 S... [more]
A0A6J1KFS93.8e-5780.69protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1HLG08.6e-5780.14protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of IVF0021553 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059311.13.90e-97100.00protein CURVATURE THYLAKOID 1C [Cucumis melo var. makuwa] >TYK04017.1 protein CU... [more]
XP_008462170.13.20e-9699.31PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis melo][more]
XP_004141763.11.03e-9295.86protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus] >KGN45386.1 hypo... [more]
XP_038897597.12.24e-8791.03protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida][more]
XP_023000405.13.01e-7680.69protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1... [more]
BLAST of IVF0021553 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52220.14.5e-3448.72FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.23.2e-3248.08FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.31.6e-1839.10FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G46820.15.9e-1836.84photosystem I P subunit [more]
AT2G46820.25.9e-1836.84photosystem I P subunit [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 61..144
e-value: 1.6E-25
score: 88.8
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR33222:SF3PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTICcoord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021553.2IVF0021553.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid