IVF0021142 (gene) Melon (IVF77) v1

Overview


Name	IVF0021142
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr04: 8176298 .. 8177166 (+)
RNA-Seq Expression	IVF0021142
Synteny	IVF0021142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATAGTTGTTTTTAGTGTTAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCTGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCAATGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAGTCGTCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAAAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGTTACAGCAACAAGAGAATGCAGCAGTACCCGGGCAATCGGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAGAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGA

mRNA sequence

ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCTGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCAATGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAGTCGTCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAAAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGTTACAGCAACAAGAGAATGCAGCAGTACCCGGGCAATCGGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAGAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCTGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCAATGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAGTCGTCAGACTTTGGAAGAGGATATTACAATTCAAAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAAAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGTTACAGCAACAAGAGAATGCAGCAGTACCCGGGCAATCGGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAGAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGA

Protein sequence

MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRRPGCGTH

Homology

[Close]

BLAST of IVF0021142 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1    MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
            MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073

Query: 61   DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
            DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133

Query: 121  QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
            QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 1193

Query: 181  SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
            SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ
Sbjct: 1194 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 1253

Query: 241  QRVQSRRRQPARNRRRPGCGTH 263
            QRVQSRRRQPARNRRRPGCGTH
Sbjct: 1254 QRVQSRRRQPARNRRRPGCGTH 1275

[Close]

BLAST of IVF0021142 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.0e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372

Query: 121 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
           QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 432

Query: 181 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
           SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ
Sbjct: 433 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 492

Query: 241 QRVQSRRRQPARNRRRPGCGTH 263
           QRVQSRRRQPARNRRRPGCGTH
Sbjct: 493 QRVQSRRRQPARNRRRPGCGTH 514

[Close]

BLAST of IVF0021142 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 254/262 (96.95%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYI+WYKNISKLYITQPGA MSHLRSNNIRLRNVA
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485

Query: 121 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
           QTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGSDP
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDP 545

Query: 181 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
           SSSYMHGHGRGRG+HNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSDEQQQQEN EEIQQ
Sbjct: 546 SSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQ 605

Query: 241 QRVQSRRRQPARNRRRPGCGTH 263
           QRVQSRRRQPARNRRRPGCGTH
Sbjct: 606 QRVQSRRRQPARNRRRPGCGTH 627

[Close]

BLAST of IVF0021142 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.8e-136
Identity = 248/264 (93.94%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1    MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
            MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNN RLRN+A
Sbjct: 744  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 803

Query: 61   DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPM- 120
            DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPM 
Sbjct: 804  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 863

Query: 121  -TQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 180
             TQTQSEHNYVSPVMMMPTFG TYYDSGVGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 864  QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 923

Query: 181  DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEI 240
            DPSSSYMHGHGRGRG+HNEYLYY+VPAAVPEQSDE QQQENAAVP QSDEQQQQENHEEI
Sbjct: 924  DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 983

Query: 241  QQQRVQSRRRQPARNRRRPGCGTH 263
            QQQRVQ RRRQ A+NR+RPGCGTH
Sbjct: 984  QQQRVQIRRRQLAKNRQRPGCGTH 1007

[Close]

BLAST of IVF0021142 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.8e-136
Identity = 248/264 (93.94%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNN RLRN+A
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPM- 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPM 
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120

Query: 121 -TQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 180
            TQTQSEHNYVSPVMMMPTFG TYYDSGVGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 180

Query: 181 DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEI 240
           DPSSSYMHGHGRGRG+HNEYLYY+VPAAVPEQSDE QQQENAAVP QSDEQQQQENHEEI
Sbjct: 181 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240

Query: 241 QQQRVQSRRRQPARNRRRPGCGTH 263
           QQQRVQ RRRQ A+NR+RPGCGTH
Sbjct: 241 QQQRVQIRRRQLAKNRQRPGCGTH 264

[Close]

BLAST of IVF0021142 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 524 bits (1350), Expect = 1.01e-183
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 312

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT
Sbjct: 313 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 372

Query: 121 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
           QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP
Sbjct: 373 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 432

Query: 181 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
           SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ
Sbjct: 433 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 492

Query: 241 QRVQSRRRQPARNRRRPGCGTH 262
           QRVQSRRRQPARNRRRPGCGTH
Sbjct: 493 QRVQSRRRQPARNRRRPGCGTH 514

[Close]

BLAST of IVF0021142 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 507 bits (1306), Expect = 2.08e-175
Identity = 254/262 (96.95%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYI+WYKNISKLYITQPGA MSHLRSNNIRLRNVA
Sbjct: 366 MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVA 425

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMT
Sbjct: 426 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMT 485

Query: 121 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
           QTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGSDP
Sbjct: 486 QTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDP 545

Query: 181 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
           SSSYMHGHGRGRG+HNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSDEQQQQEN EEIQQ
Sbjct: 546 SSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQ 605

Query: 241 QRVQSRRRQPARNRRRPGCGTH 262
           QRVQSRRRQPARNRRRPGCGTH
Sbjct: 606 QRVQSRRRQPARNRRRPGCGTH 627

[Close]

BLAST of IVF0021142 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 491 bits (1264), Expect = 1.70e-174
Identity = 248/264 (93.94%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNN RLRN+A
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMT
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120

Query: 121 QTQ--SEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 180
           QTQ  SEHNYVSPVMMMPTFG TYYDSGVGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 180

Query: 181 DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEI 240
           DPSSSYMHGHGRGRG+HNEYLYY+VPAAVPEQSDE QQQENAAVP QSDEQQQQENHEEI
Sbjct: 181 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240

Query: 241 QQQRVQSRRRQPARNRRRPGCGTH 262
           QQQRVQ RRRQ A+NR+RPGCGTH
Sbjct: 241 QQQRVQIRRRQLAKNRQRPGCGTH 264

[Close]

BLAST of IVF0021142 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 524 bits (1350), Expect = 2.54e-174
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1    MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
            MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA
Sbjct: 1014 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 1073

Query: 61   DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
            DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT
Sbjct: 1074 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 1133

Query: 121  QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 180
            QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP
Sbjct: 1134 QTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDP 1193

Query: 181  SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 240
            SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ
Sbjct: 1194 SSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQ 1253

Query: 241  QRVQSRRRQPARNRRRPGCGTH 262
            QRVQSRRRQPARNRRRPGCGTH
Sbjct: 1254 QRVQSRRRQPARNRRRPGCGTH 1275

[Close]

BLAST of IVF0021142 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 491 bits (1264), Expect = 2.73e-164
Identity = 248/264 (93.94%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1    MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 60
            MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNN RLRN+A
Sbjct: 744  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 803

Query: 61   DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMT 120
            DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMT
Sbjct: 804  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 863

Query: 121  QTQ--SEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 180
            QTQ  SEHNYVSPVMMMPTFG TYYDSGVGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 864  QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 923

Query: 181  DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEI 240
            DPSSSYMHGHGRGRG+HNEYLYY+VPAAVPEQSDE QQQENAAVP QSDEQQQQENHEEI
Sbjct: 924  DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 983

Query: 241  QQQRVQSRRRQPARNRRRPGCGTH 262
            QQQRVQ RRRQ A+NR+RPGCGTH
Sbjct: 984  QQQRVQIRRRQLAKNRQRPGCGTH 1007

The following BLAST results are available for this feature:

BLAST of IVF0021142 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAB0	1.0e-145	100.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T598	1.0e-145	100.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7VIP6	1.3e-140	96.95	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	9.8e-136	93.94	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A1S3BLK4	9.8e-136	93.94	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of IVF0021142 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036767.1	1.01e-183	100.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0067080.1	2.08e-175	96.95	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
XP_008449513.1	1.70e-174	93.94	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
TYJ95836.1	2.54e-174	100.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK27427.1	2.73e-164	93.94	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of IVF0021142 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 228..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021142.1	IVF0021142.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding