IVF0020978 (gene) Melon (IVF77) v1

Overview


Name	IVF0020978
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	VQ motif-containing protein 1-like
Location	chr07: 17988843 .. 17989187 (+)
RNA-Seq Expression	IVF0020978
Synteny	IVF0020978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTCTCAAAATTTATCATTTTTTTTTTGCTCTTTTAAAGAAAAAGAAAAGTTCTGCATAAAAAAAGTTCCCAATTTCTCAAATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAGAAGCTGACGGGCAAAGATTCGGTAGTGGCAGTGGGTGAGGAAATCCGTCGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCTTCGTTCAAAGAGTTCCAAAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGAAATGAATACATACCCA

mRNA sequence

CACTTCTCAAAATTTATCATTTTTTTTTTGCTCTTTTAAAGAAAAAGAAAAGTTCTGCATAAAAAAAGTTCCCAATTTCTCAAATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAGAAGCTGACGGGCAAAGATTCGGTAGTGGCAGTGGGTGAGGAAATCCGTCGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCTTCGTTCAAAGAGTTCCAAAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGAAATGAATACATACCCA

Coding sequence (CDS)

ATGGAAGCAACTCATTCAACTAGGGTTGTGATTATTGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAAACGGTGGTGCAGAAGCTGACGGGCAAAGATTCGGTAGTGGCAGTGGGTGAGGAAATCCGTCGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCTTCGTTCAAAGAGTTCCAAAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSFKEFQRVLREMPRIDELYSD

Homology

[Close]

BLAST of IVF0020978 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVA--------------------VGEEIRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++VA                    +GE+ R+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of IVF0020978 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGE-EIRRQTGSARNSS---------LL 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VVA G  E   Q    ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 RDSSFKEFQRVLREMPRIDELYS 81
          R     EF    REMP + ELY+
Sbjct: 71 RGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of IVF0020978 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 82
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of IVF0020978 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.1e-32
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV V EE RRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 82
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of IVF0020978 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.0e-16
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 6  STRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSFKEF 65
          STRVVIIDTKYV TDAKSFKTVVQKLTGKD   A  E+ R   G + +SSL RDSSFKEF
Sbjct: 8  STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSSFKEF 67

Query: 66 QRVLREMPR 75
          QRVLREM +
Sbjct: 68 QRVLREMAK 76

[Close]

BLAST of IVF0020978 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKD  V   EE R+ +G   +  ++ DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 76
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of IVF0020978 vs. ExPASy TrEMBL
Match: A0A4D6M6V8 (VQ domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g960 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV--AVGEEIRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS    A  E  R   G    S L+RD SFK+F
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGAKAERNRHDKGGVPRSFLMRDVSFKDF 71

Query: 68 QRVLREMPRIDELYSD 82
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of IVF0020978 vs. NCBI nr
Match: KAA0063001.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 1.51e-46
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60
          MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of IVF0020978 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_014778 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 2.41e-43
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV V EE RRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of IVF0020978 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 127 bits (320), Expect = 1.62e-36
Identity = 70/81 (86.42%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSV    EE  R TG  RNS LLRDS
Sbjct: 1  MEAAHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVA---EEENRHTGGTRNSGLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 78

[Close]

BLAST of IVF0020978 vs. NCBI nr
Match: KAG6577059.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015070.1 VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 1.33e-27
Identity = 62/74 (83.78%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3  ATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSF 62
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD V    EE R   G ARNSSLLRDSSF
Sbjct: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA---EENRHGDG-ARNSSLLRDSSF 61

Query: 63 KEFQRVLREMPRID 76
          KEFQRVLREMPRID
Sbjct: 62 KEFQRVLREMPRID 71

[Close]

BLAST of IVF0020978 vs. NCBI nr
Match: XP_022142787.1 (VQ motif-containing protein 10-like [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 1.19e-22
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 6  STRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSFKEF 65
          STRVVIIDTKYV TDAKSFKTVVQKLTGKD   A  E+ R   G + +SSL RDSSFKEF
Sbjct: 8  STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSSFKEF 67

Query: 66 QRVLREMPR 74
          QRVLREM +
Sbjct: 68 QRVLREMAK 76

[Close]

BLAST of IVF0020978 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVA--------------------VGEEIRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++VA                    +GE+ R+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of IVF0020978 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGE-EIRRQTGSARNSS---------LL 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VVA G  E   Q    ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 RDSSFKEFQRVLREMPRIDELYS 81
          R     EF    REMP + ELY+
Sbjct: 71 RGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of IVF0020978 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	3.0e-08	39.13	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	5.2e-08	45.78	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of IVF0020978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBD1	3.3e-34	100.00	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KXJ0	9.1e-32	95.06	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A6J1CNV7	7.0e-16	73.91	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A6J1FVF7	1.9e-13	67.61	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A4D6M6V8	2.3e-11	56.58	VQ domain-containing protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g960 PE=4 ...	[more]

BLAST of IVF0020978 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063001.1	1.51e-46	100.00	VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ mot...	[more]
KGN53544.1	2.41e-43	95.06	hypothetical protein Csa_014778 [Cucumis sativus]	[more]
XP_038889427.1	1.62e-36	86.42	VQ motif-containing protein 1-like [Benincasa hispida]	[more]
KAG6577059.1	1.33e-27	83.78	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022142787.1	1.19e-22	73.91	VQ motif-containing protein 10-like [Momordica charantia]	[more]

BLAST of IVF0020978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	2.1e-09	39.13	VQ motif-containing protein	[more]
AT1G17147.1	3.7e-09	45.78	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 1.9E-11 score: 43.2
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..80
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 4..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020978.1	IVF0020978.1	mRNA