Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA
mRNA sequence
ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA
Coding sequence (CDS)
ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA
Protein sequence
MLREEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNGAKYWWRMEESR
Homology
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match:
A0A5D3C1T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00310 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0
Query: 11 LAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 70
L + + IRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE
Sbjct: 185 LREAAIGRIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 244
Query: 71 DRKVELAAFLLQNGAKYWWRMEESR 96
DRKVELAAFLLQNGAKYWWRMEE R
Sbjct: 245 DRKVELAAFLLQNGAKYWWRMEEKR 269
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG TFAGTTNP D EAWL LIEKCF
Sbjct: 42 EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG TFAGTTNP D EAWL LIEKCF
Sbjct: 42 EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRL+SGIRSAQSD EKK+GIERLKALG TF GTTNPADAEAWL LIEKCF
Sbjct: 61 EEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCF 120
Query: 64 RVMRCLEDRKVELAAFLLQNG----AKYWWRMEESR 96
RV RC EDRKVELA+FLLQNG + WWRMEESR
Sbjct: 121 RVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESR 156
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match:
A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRL+ GIR AQSD EKK+GIERLKALG TF GTTNP DAE WL LIEKCF
Sbjct: 42 EEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
+V RC EDRKVELAAFLLQNGA+ WW MEESR
Sbjct: 102 KVTRCSEDRKVELAAFLLQNGAEDWWHMEESR 133
BLAST of IVF0020549 vs. NCBI nr
Match:
KAA0063973.1 (uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK05168.1 uncharacterized protein E5676_scaffold1415G00310 [Cucumis melo var. makuwa])
HSP 1 Score: 161 bits (407), Expect = 7.18e-47
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0
Query: 11 LAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 70
L + + IRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE
Sbjct: 185 LREAAIGRIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 244
Query: 71 DRKVELAAFLLQNGAKYWWRMEESR 95
DRKVELAAFLLQNGAKYWWRMEE R
Sbjct: 245 DRKVELAAFLLQNGAKYWWRMEEKR 269
BLAST of IVF0020549 vs. NCBI nr
Match:
KAA0047616.1 (uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK08273.1 uncharacterized protein E5676_scaffold648G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 152 bits (385), Expect = 3.15e-44
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQ LVSGIRSAQS+LEK F IERLKALG TFAGTTN ADAEAWL LIEKCF
Sbjct: 42 EEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
+VMRCLEDRKVEL FLL+NG + WWR+ ESR
Sbjct: 102 KVMRCLEDRKVELVVFLLKNGTEDWWRLTESR 133
BLAST of IVF0020549 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 159 bits (402), Expect = 6.32e-43
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG TFAGTTNP D EAWL LIEKCF
Sbjct: 42 EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133
BLAST of IVF0020549 vs. NCBI nr
Match:
TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])
HSP 1 Score: 159 bits (402), Expect = 6.89e-43
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG TFAGTTNP D EAWL LIEKCF
Sbjct: 42 EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101
Query: 64 RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133
BLAST of IVF0020549 vs. NCBI nr
Match:
KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 157 bits (398), Expect = 2.82e-42
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0
Query: 4 EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
EEQLLDRLAQRL+SGIRSAQSD EKK+GIERLKALG TF GTTNPADAEAWL LIEKCF
Sbjct: 61 EEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCF 120
Query: 64 RVMRCLEDRKVELAAFLLQNGA----KYWWRMEESR 95
RV RC EDRKVELA+FLLQNG + WWRMEESR
Sbjct: 121 RVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESR 156
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C1T8 | 3.2e-36 | 90.59 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BB91 | 1.6e-35 | 85.87 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7T1M0 | 1.6e-35 | 85.87 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5D3DES5 | 4.6e-35 | 82.29 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7SJ99 | 1.8e-34 | 81.52 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
Match Name | E-value | Identity | Description | |
KAA0063973.1 | 7.18e-47 | 90.59 | uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK... | [more] |
KAA0047616.1 | 3.15e-44 | 81.52 | uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK0... | [more] |
KAA0036813.1 | 6.32e-43 | 85.87 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYJ95881.1 | 6.89e-43 | 85.87 | retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa] | [more] |
KAA0035225.1 | 2.82e-42 | 82.29 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... | [more] |
Match Name | E-value | Identity | Description | |