IVF0020549 (gene) Melon (IVF77) v1

Overview
NameIVF0020549
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationchr03: 12200920 .. 12201207 (+)
RNA-Seq ExpressionIVF0020549
SyntenyIVF0020549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA

mRNA sequence

ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA

Coding sequence (CDS)

ATGTTGAGGGAAGAGCAATTGCTTGATAGATTGGCTCAAAGATTGGTGTCAGGGATTAGATCGGCACAATCAGACCTAGAAAAGAAGTTTGGGATTGAGCGATTGAAAGCCTTGGGTGTTGCCACTTTCGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGGCTTAATTTGATTGAAAAATGCTTTAGAGTAATGAGATGTCTGGAGGATAGAAAGGTGGAACTTGCTGCCTTTTTACTCCAAAATGGTGCTAAATATTGGTGGCGCATGGAAGAAAGTAGATGA

Protein sequence

MLREEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLEDRKVELAAFLLQNGAKYWWRMEESR
Homology
[Close]
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match: A0A5D3C1T8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00310 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.2e-36
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 11  LAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 70
           L +  +  IRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE
Sbjct: 185 LREAAIGRIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 244

Query: 71  DRKVELAAFLLQNGAKYWWRMEESR 96
           DRKVELAAFLLQNGAKYWWRMEE R
Sbjct: 245 DRKVELAAFLLQNGAKYWWRMEEKR 269

[Close]
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG  TFAGTTNP D EAWL LIEKCF
Sbjct: 42  EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
           RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133

[Close]
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG  TFAGTTNP D EAWL LIEKCF
Sbjct: 42  EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
           RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133

[Close]
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRL+SGIRSAQSD EKK+GIERLKALG  TF GTTNPADAEAWL LIEKCF
Sbjct: 61  EEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCF 120

Query: 64  RVMRCLEDRKVELAAFLLQNG----AKYWWRMEESR 96
           RV RC EDRKVELA+FLLQNG     + WWRMEESR
Sbjct: 121 RVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESR 156

[Close]
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRL+ GIR AQSD EKK+GIERLKALG  TF GTTNP DAE WL LIEKCF
Sbjct: 42  EEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 96
           +V RC EDRKVELAAFLLQNGA+ WW MEESR
Sbjct: 102 KVTRCSEDRKVELAAFLLQNGAEDWWHMEESR 133

[Close]
BLAST of IVF0020549 vs. NCBI nr
Match: KAA0063973.1 (uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK05168.1 uncharacterized protein E5676_scaffold1415G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 7.18e-47
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 11  LAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 70
           L +  +  IRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE
Sbjct: 185 LREAAIGRIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCFRVMRCLE 244

Query: 71  DRKVELAAFLLQNGAKYWWRMEESR 95
           DRKVELAAFLLQNGAKYWWRMEE R
Sbjct: 245 DRKVELAAFLLQNGAKYWWRMEEKR 269

[Close]
BLAST of IVF0020549 vs. NCBI nr
Match: KAA0047616.1 (uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK08273.1 uncharacterized protein E5676_scaffold648G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (385), Expect = 3.15e-44
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQ LVSGIRSAQS+LEK F IERLKALG  TFAGTTN ADAEAWL LIEKCF
Sbjct: 42  EEQLLDRLAQGLVSGIRSAQSNLEKNFWIERLKALGATTFAGTTNLADAEAWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
           +VMRCLEDRKVEL  FLL+NG + WWR+ ESR
Sbjct: 102 KVMRCLEDRKVELVVFLLKNGTEDWWRLTESR 133

[Close]
BLAST of IVF0020549 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 6.32e-43
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG  TFAGTTNP D EAWL LIEKCF
Sbjct: 42  EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
           RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133

[Close]
BLAST of IVF0020549 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 6.89e-43
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRLVSGIRSAQSD EKK+G ERLKALG  TFAGTTNP D EAWL LIEKCF
Sbjct: 42  EEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCF 101

Query: 64  RVMRCLEDRKVELAAFLLQNGAKYWWRMEESR 95
           RV R LEDRKVELAAFLLQN A+ WWRMEESR
Sbjct: 102 RVTRYLEDRKVELAAFLLQNDAEDWWRMEESR 133

[Close]
BLAST of IVF0020549 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (398), Expect = 2.82e-42
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0 

Query: 4   EEQLLDRLAQRLVSGIRSAQSDLEKKFGIERLKALGVATFAGTTNPADAEAWLNLIEKCF 63
           EEQLLDRLAQRL+SGIRSAQSD EKK+GIERLKALG  TF GTTNPADAEAWL LIEKCF
Sbjct: 61  EEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCF 120

Query: 64  RVMRCLEDRKVELAAFLLQNGA----KYWWRMEESR 95
           RV RC EDRKVELA+FLLQNG     + WWRMEESR
Sbjct: 121 RVTRCPEDRKVELASFLLQNGGGAKGEDWWRMEESR 156

The following BLAST results are available for this feature:
BLAST of IVF0020549 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0020549 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C1T83.2e-3690.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BB911.6e-3585.87Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7T1M01.6e-3585.87Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5D3DES54.6e-3582.29DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SJ991.8e-3481.52DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of IVF0020549 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063973.17.18e-4790.59uncharacterized protein E6C27_scaffold616G001300 [Cucumis melo var. makuwa] >TYK... [more]
KAA0047616.13.15e-4481.52uncharacterized protein E6C27_scaffold115G00890 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0036813.16.32e-4385.87DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYJ95881.16.89e-4385.87retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0035225.12.82e-4282.29DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D... [more]
BLAST of IVF0020549 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020549.2IVF0020549.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding