IVF0019553 (gene) Melon (IVF77) v1

Overview
NameIVF0019553
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNon-LTR retroelement reverse transcriptase-like protein
Locationchr03: 17721846 .. 17722121 (-)
RNA-Seq ExpressionIVF0019553
SyntenyIVF0019553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCCCTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGAATTCCGGTGCTCGTCCCAAGAAAACGTGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCTCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTAATATGTCTTTCGATCTTCGGGGCTCGTGCTCCAAGGAATTCAACCCACACTCCTGGCATGCTCCCTAA

mRNA sequence

ATGGTTAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCCCTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGAATTCCGGTGCTCGTCCCAAGAAAACGTGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCTCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTAATATGTCTTTCGATCTTCGGGGCTCGTGCTCCAAGGAATTCAACCCACACTCCTGGCATGCTCCCTAA

Coding sequence (CDS)

ATGGTTAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCCCTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGAATTCCGGTGCTCGTCCCAAGAAAACGTGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCTCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTAATATGTCTTTCGATCTTCGGGGCTCGTGCTCCAAGGAATTCAACCCACACTCCTGGCATGCTCCCTAA

Protein sequence

MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSDGFFPLLRIGNMSFDLRGSCSKEFNPHSWHAP
Homology
[Close]
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
          M NASNEW+TLVRCQKPLEM LQRRK+ EL++F CSSQEN S+NAPDS FSSWGKKRS  
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 GFFPLLRIGNMSFDLRGSCSKEFNPHSWHA 91
          GFF LLRIG+ SFDL+GS  ++FN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 1   MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
           M NASNEWR LVRCQKPLEM LQRRKR ELE+FRCSSQENVSENAPDS FSSWGKKRS D
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFFPLLRIGNMS 73
           GFFPLLRIG+ S
Sbjct: 225 GFFPLLRIGHKS 236

[Close]
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 3   NASNEWRTLVRCQKPLEMPLQRRKRAELEE---------------FRCSSQENVSENAPD 62
           NAS EWRTLVRCQKPL+M LQ+RK AELE+               FRCSS EN SENA D
Sbjct: 286 NASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENALD 345

Query: 63  SVFSSWGKKRSSDGFFPLLRIGNMSFDLRGSCSKEFNPHS 88
           SVFSS G+K+  D FFPLLRIG+ SFDLRGS S++FNPHS
Sbjct: 346 SVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.6e-23
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 1  MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
          MV+ASNEWRTLVRCQKPLEM LQ+RKRAELE+F   SQEN SENA + VFSSWGKK S +
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 GFFPLLRIGNMSFDL 76
          GFFPL RIG+ SFDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.6e-22
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 22   LQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSDGFFPLLRIGNMSFDLRGSCSK 81
            ++RR RA+L++FRCSSQEN SEN  DSVFSSW KK + DGFFPLLRIG+ SFDLRGS S+
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   EFNPHSWHAP 92
            +FNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

[Close]
BLAST of IVF0019553 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 6.76e-37
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 0 

Query: 1  MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
          M NASNEW+TLVRCQKPLEM LQRRK+ EL++F CSSQEN S+NAPDS FSSWGKKRS  
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 GFFPLLRIGNMSFDLRGSCSKEFNPHSWHA 90
          GFF LLRIG+ SFDL+GS  ++FN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]
BLAST of IVF0019553 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 1.21e-32
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 1   MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
           M NASNEWR LVRCQKPLEM LQRRKR ELE+FRCSSQENVSENAPDS FSSWGKKRS D
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  GFFPLLRIGNMS 72
           GFFPLLRIG+ S
Sbjct: 225 GFFPLLRIGHKS 236

[Close]
BLAST of IVF0019553 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.11e-30
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 3   NASNEWRTLVRCQKPLEMPLQRRKRAELEEF---------------RCSSQENVSENAPD 62
           NAS EWRTLVRCQKPL+M LQ+RK AELE+F               RCSS EN SENA D
Sbjct: 286 NASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENALD 345

Query: 63  SVFSSWGKKRSSDGFFPLLRIGNMSFDLRGSCSKEFNPHS 87
           SVFSS G+K+  D FFPLLRIG+ SFDLRGS S++FNPHS
Sbjct: 346 SVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]
BLAST of IVF0019553 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 1.18e-28
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MVNASNEWRTLVRCQKPLEMPLQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSD 60
          MV+ASNEWRTLVRCQKPLEM LQ+RKRAELE+F   SQEN SENA + VFSSWGKK S +
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 GFFPLLRIGNMSFDLRGSCSK 81
          GFFPL RIG+ SFDL     K
Sbjct: 61 GFFPLFRIGHKSFDLEDHTLK 81

[Close]
BLAST of IVF0019553 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 4.28e-27
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 22   LQRRKRAELEEFRCSSQENVSENAPDSVFSSWGKKRSSDGFFPLLRIGNMSFDLRGSCSK 81
            ++RR RA+L++FRCSSQEN SEN  DSVFSSW KK + DGFFPLLRIG+ SFDLRGS S+
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   EFNPHSWHAP 91
            +FNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

The following BLAST results are available for this feature:
BLAST of IVF0019553 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0019553 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVV01.1e-3074.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DFP23.4e-2787.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGX32.7e-2465.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E5W46.6e-2377.33NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7V5J25.6e-2274.29Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
BLAST of IVF0019553 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057641.16.76e-3774.44hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
TYK22521.11.21e-3287.50uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0040927.13.11e-3065.00hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061... [more]
KAA0035524.11.18e-2872.84NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t... [more]
KAA0062888.14.28e-2774.29non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
BLAST of IVF0019553 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019553.1IVF0019553.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003964 RNA-directed DNA polymerase activity