IVF0018904 (gene) Melon (IVF77) v1

Overview


Name	IVF0018904
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein MNN4-like
Location	chr04: 18286845 .. 18287051 (+)
RNA-Seq Expression	IVF0018904
Synteny	IVF0018904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCAAAGGAGGACGAAGAGGCACGTTACAAGAAATGTGATGAGGAGGAAAGGCGAAGGAAAAAGGAATTGAAGAAACAAGGGAAAAACGAACAATCTTCCTTTCCTGTCACCTCAACTGAGTTTGAAAGGGTCATGAGAAAGGCCCAAGGGAAGAAAGAGAAGGTAGCATATAGCCTTCTCAAAATGAAAGTCACGGTGTAA

mRNA sequence

ATGAGAGCAAAGGAGGACGAAGAGGCACGTTACAAGAAATGTGATGAGGAGGAAAGGCGAAGGAAAAAGGAATTGAAGAAACAAGGGAAAAACGAACAATCTTCCTTTCCTGTCACCTCAACTGAGTTTGAAAGGGTCATGAGAAAGGCCCAAGGGAAGAAAGAGAAGGTAGCATATAGCCTTCTCAAAATGAAAGTCACGGTGTAA

Coding sequence (CDS)

ATGAGAGCAAAGGAGGACGAAGAGGCACGTTACAAGAAATGTGATGAGGAGGAAAGGCGAAGGAAAAAGGAATTGAAGAAACAAGGGAAAAACGAACAATCTTCCTTTCCTGTCACCTCAACTGAGTTTGAAAGGGTCATGAGAAAGGCCCAAGGGAAGAAAGAGAAGGTAGCATATAGCCTTCTCAAAATGAAAGTCACGGTGTAA

Protein sequence

MRAKEDEEARYKKCDEEERRRKKELKKQGKNEQSSFPVTSTEFERVMRKAQGKKEKVAYSLLKMKVTV

Homology

[Close]

BLAST of IVF0018904 vs. ExPASy TrEMBL
Match: A0A5D3BNL6 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-08
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 2   RAKEDEEARYKKCDEEERRRKKELKKQGKNE--QSSFPVTSTEFERVMRKAQGKKEKVAY 61
           +AKE E+ R KK +EEERRRK+ELKKQGK E  QSS  +  TEFERV RKAQ KKEKV  
Sbjct: 51  KAKEKEKERRKKRNEEERRRKEELKKQGKKEKVQSSPSIAPTEFERVARKAQKKKEKVVS 110

Query: 62  SLLKMKVTV 69
            LLKMKV V
Sbjct: 111 GLLKMKVIV 119

[Close]

BLAST of IVF0018904 vs. NCBI nr
Match: TYK00332.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.19e-11
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 3   AKEDEEARYKKCDEEERRRKKELKKQGKNE--QSSFPVTSTEFERVMRKAQGKKEKVAYS 62
           AKE E+ R KK +EEERRRK+ELKKQGK E  QSS  +  TEFERV RKAQ KKEKV   
Sbjct: 52  AKEKEKERRKKRNEEERRRKEELKKQGKKEKVQSSPSIAPTEFERVARKAQKKKEKVVSG 111

Query: 63  LLKMKVTV 68
           LLKMKV V
Sbjct: 112 LLKMKVIV 119

The following BLAST results are available for this feature:

BLAST of IVF0018904 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018904 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNL6	2.0e-08	68.12	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G0...	[more]

BLAST of IVF0018904 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00332.1	1.19e-11	69.12	protein MNN4-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018904 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018904.2	IVF0018904.2	mRNA