Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
mRNA sequence
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
Coding sequence (CDS)
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAAGAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA
Protein sequence
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Homology
BLAST of IVF0018433 vs. ExPASy TrEMBL
Match:
A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 1413 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 1472
Query: 61 ATWEREDDMRSRYPELFEE 80
ATWEREDDMRSRYPELFEE
Sbjct: 1473 ATWEREDDMRSRYPELFEE 1491
BLAST of IVF0018433 vs. ExPASy TrEMBL
Match:
A0A5A7TQM9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110
Query: 61 ATWEREDDMRSRYPELFEE 80
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
BLAST of IVF0018433 vs. ExPASy TrEMBL
Match:
A0A5A7V8Y0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143
Query: 61 ATWEREDDMRSRYPELFEE 80
ATWEREDDMRSRYPELFEE
Sbjct: 144 ATWEREDDMRSRYPELFEE 162
BLAST of IVF0018433 vs. ExPASy TrEMBL
Match:
A0A5A7TXC7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25154G00010 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 84 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 143
Query: 61 ATWEREDDMRSRYPELFEE 80
ATWEREDDMRSRYPELFEE
Sbjct: 144 ATWEREDDMRSRYPELFEE 162
BLAST of IVF0018433 vs. ExPASy TrEMBL
Match:
A0A5A7UDB9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6407G00010 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110
Query: 61 ATWEREDDMRSRYPELFEE 80
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
BLAST of IVF0018433 vs. NCBI nr
Match:
KAA0043673.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 160 bits (406), Expect = 1.16e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLWRNHRVEE
Sbjct: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEE 60
Query: 61 ATWEREDDMRSRYPELFEE 79
ATWEREDDMRSRYPELFEE
Sbjct: 61 ATWEREDDMRSRYPELFEE 79
BLAST of IVF0018433 vs. NCBI nr
Match:
KAA0053953.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (409), Expect = 1.88e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110
Query: 61 ATWEREDDMRSRYPELFEE 79
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
BLAST of IVF0018433 vs. NCBI nr
Match:
KAA0043675.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (409), Expect = 1.88e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 110
Query: 61 ATWEREDDMRSRYPELFEE 79
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
BLAST of IVF0018433 vs. NCBI nr
Match:
KAA0043507.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 161 bits (408), Expect = 2.67e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRIEE 110
Query: 61 ATWEREDDMRSRYPELFEE 79
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
BLAST of IVF0018433 vs. NCBI nr
Match:
KAA0063117.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 161 bits (408), Expect = 2.67e-49
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEE 60
MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHR+EE
Sbjct: 51 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRIEE 110
Query: 61 ATWEREDDMRSRYPELFEE 79
ATWEREDDMRSRYPELFEE
Sbjct: 111 ATWEREDDMRSRYPELFEE 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UAA8 | 1.2e-36 | 100.00 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... | [more] |
| A0A5A7TQM9 | 1.2e-36 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 ... | [more] |
| A0A5A7V8Y0 | 1.2e-36 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9033G00010 P... | [more] |
| A0A5A7TXC7 | 1.2e-36 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25154G00010 ... | [more] |
| A0A5A7UDB9 | 1.2e-36 | 100.00 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6407G00010 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
