IVF0018203 (gene) Melon (IVF77) v1

Overview
NameIVF0018203
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 30267988 .. 30268560 (+)
RNA-Seq ExpressionIVF0018203
SyntenyIVF0018203
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATATGAACATTCTCAGCGGTTTTCCACGCAATTTTCTTTTGCTCCTCTATTCTATTTATTTCCTCTTCTCTGCACATTGAATTTCGCGGCATTCTCTCGTTCGCTGATCACTTTTCATCTTTTTCTCAACAGTGAGCGCCTTCTTTCCTCTTCTGATTTATGCCATGTGTTCTTTATTGTTGTGATTTCTATACTTTTCTTGTATTCATTTGATAAATTCTGACTTGGGTGTGCTTTAAATCCTCGATGAATTGCAAAAGGTTTCAAATTGGGTCACTCTGTGATAAAAAATGGTGGGGAAAATTTGGGAAATTGATTGAATTTAATTTGCTCTTCTATTTGCAGTTGCCCATGTGCTAAATGTGAGGAAATAATTGAAATTTTAGAAGATGTTTCTCTTTGATGATCAATTTATCTTATTGTTTGGATTTTGCTTACCAATTTAAGCTTATGAACTTTCGCAATAATTGTTTGTGTTGTGTCTTATTGCATGTAATTTAAGAATTGGACAACTCTGACTTTTTCACATTTACCCCCAAATTTAATGTCTGCAGATCCTTCTTATTGA

mRNA sequence

ATGAGATATGAACATTCTCAGCGGTTTTCCACGCAATTTTCTTTTGCTCCTCTATTCTATTTATTTCCTCTTCTCTGCACATTGAATTTCGCGGCATTCTCTCGTTCGCTGATCACTTTTCATCTTTTTCTCAACAGTGAGCGCCTTCTTTCCTCTTCTGATTTATGCCATGTTTGCCCATGTGCTAAATATCCTTCTTATTGA

Coding sequence (CDS)

ATGAGATATGAACATTCTCAGCGGTTTTCCACGCAATTTTCTTTTGCTCCTCTATTCTATTTATTTCCTCTTCTCTGCACATTGAATTTCGCGGCATTCTCTCGTTCGCTGATCACTTTTCATCTTTTTCTCAACAGTGAGCGCCTTCTTTCCTCTTCTGATTTATGCCATGTTTGCCCATGTGCTAAATATCCTTCTTATTGA

Protein sequence

MRYEHSQRFSTQFSFAPLFYLFPLLCTLNFAAFSRSLITFHLFLNSERLLSSSDLCHVCPCAKYPSY
Homology
[Close]
BLAST of IVF0018203 vs. ExPASy TrEMBL
Match: A0A0A0K9W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G079770 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 42/66 (63.64%), Postives = 43/66 (65.15%), Query Frame = 0 

Query: 2  RYEHSQRFSTQFSFAPLFYLFPLLCTLNFAAFSRSLITFHLFLNSERLLSSSDLCHVCPC 61
          RYEHSQR ST+FSFA      PLLCTLNFAAFS SLITFHLF               CPC
Sbjct: 13 RYEHSQRLSTRFSFATPILFIPLLCTLNFAAFSLSLITFHLFSQH------------CPC 66

Query: 62 AKYPSY 68
          AKYPSY
Sbjct: 73 AKYPSY 66

[Close]
BLAST of IVF0018203 vs. NCBI nr
Match: KGN46283.1 (hypothetical protein Csa_005738 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 5.18e-16
Identity = 43/66 (65.15%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 2  RYEHSQRFSTQFSFAPLFYLFPLLCTLNFAAFSRSLITFHLFLNSERLLSSSDLCHVCPC 61
          RYEHSQR ST+FSFA      PLLCTLNFAAFS SLITFHLF  S+           CPC
Sbjct: 13 RYEHSQRLSTRFSFATPILFIPLLCTLNFAAFSLSLITFHLF--SQH----------CPC 66

Query: 62 AKYPSY 67
          AKYPSY
Sbjct: 73 AKYPSY 66

[Close]
BLAST of IVF0018203 vs. NCBI nr
Match: XP_031743096.1 (UMP-CMP kinase 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.05e-10
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 2  RYEHSQRFSTQFSFAPLFYLFPLLCTLNFAAFSRSLITFHLFLNSERLLS 51
          RYEHSQR ST+FSFA      PLLCTLNFAAFS SLITFHLF     LL+
Sbjct: 13 RYEHSQRLSTRFSFATPILFIPLLCTLNFAAFSLSLITFHLFSQQSFLLN 62

The following BLAST results are available for this feature:
BLAST of IVF0018203 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018203 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W73.3e-1163.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G079770 PE=4 SV=1[more]
BLAST of IVF0018203 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46283.15.18e-1665.15hypothetical protein Csa_005738 [Cucumis sativus][more]
XP_031743096.12.05e-1070.00UMP-CMP kinase 3 isoform X1 [Cucumis sativus][more]
BLAST of IVF0018203 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018203.1IVF0018203.1mRNA