|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGATTTCTTCAATCTCATGAGCTCAGATTGAAGTTGTTTGAATCTACTCCTTCAAAGAAGCTTTCTCATGCAATCCTCCTATAAAGGGTAATCTAGTGGAAAAAGAGGTCAACATGGTGGTAGAGGCAATAGACGATCCAACGTTGTAACAAATACAGAGTTAGAGAGCAAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGAAAGACGCAAAAATGGTGGTCGTGGAGATTTTTCTCACATACGATGTTTCAATTGTAGACATTATGAGCATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAATCACTCGAATGCATGAGCAACATGAAAATGATCAAGGTCTTCTCTTCCTCACGCTCAACGTCCAAGAAACAAGCACCGAAGAAATATATGGTATCTTGA mRNA sequence ATGAGATTTCTTCAATCTCATGAGCTCAGATTGAAGTTGTTTGAATCTACTCCTTCAAAGAAGCTTTCTCATTTAGAGAGCAAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGAAAGACGCAAAAATGGTGGTCGTGGAGATTTTTCTCACATACGATGTTTCAATTGTAGACATTATGAGCATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAATCACTCGAATGCATGAGCAACATGAAAATGATCAAGGTCTTCTCTTCCTCACGCTCAACGTCCAAGAAACAAGCACCGAAGAAATATATGGTATCTTGA Coding sequence (CDS) ATGAGATTTCTTCAATCTCATGAGCTCAGATTGAAGTTGTTTGAATCTACTCCTTCAAAGAAGCTTTCTCATTTAGAGAGCAAGACAATCAATCTTCTTCAAATAGAGGAAGGGGAAGAAGTTCAAATAGAGAAAGACGCAAAAATGGTGGTCGTGGAGATTTTTCTCACATACGATGTTTCAATTGTAGACATTATGAGCATTTTCAAGCAGACTGTTGGTCTAAGAAGGCTAATTCTAATCAAGCAGAAATCACTCGAATGCATGAGCAACATGAAAATGATCAAGGTCTTCTCTTCCTCACGCTCAACGTCCAAGAAACAAGCACCGAAGAAATATATGGTATCTTGA Protein sequence MRFLQSHELRLKLFESTPSKKLSHLESKTINLLQIEEGEEVQIEKDAKMVVVEIFLTYDVSIVDIMSIFKQTVGLRRLILIKQKSLECMSNMKMIKVFSSSRSTSKKQAPKKYMVS
Homology
BLAST of IVF0016254 vs. NCBI nr
Match: XP_038877452.1 (uncharacterized protein LOC120069734 [Benincasa hispida]) HSP 1 Score: 87.0 bits (214), Expect = 7.29e-18 Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 1 MRFLQSHELRLKLFESTPSKKLSHLES-----------------------------KTIN 60
M LQSHELRLKLF+S P +K H++S +TIN
Sbjct: 110 MGSLQSHELRLKLFDSNPLEKAFHMQSSSRGRSGGRRVGRGNRGNGRSNVVTSQRAETIN 169
Query: 61 LLQIEEGEEVQIEKDAKMVVVEIFLTYDVSIVDIMSIFKQT 72
LLQIEEGEEVQIE++A++VVVEIFLTY+VSIVD+M IFKQT
Sbjct: 170 LLQIEEGEEVQIEQEAEVVVVEIFLTYNVSIVDVMDIFKQT 210
BLAST of IVF0016254 vs. NCBI nr
Match: XP_038904397.1 (uncharacterized protein LOC120090760 [Benincasa hispida]) HSP 1 Score: 52.0 bits (123), Expect = 7.19e-05 Identity = 27/44 (61.36%), Postives = 39/44 (88.64%), Query Frame = 0
Query: 27 SKTINLLQIEEGEEVQIEKDAKMVVVEIFLTYDVSIVDIMSIFK 70
+KTI LLQIEE +VQ+E++A++ VV+IFLTY+VSIV++M IF+
Sbjct: 75 AKTIKLLQIEEQGQVQVEEEAEVEVVKIFLTYNVSIVEVMGIFQ 118
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_038877452.1 | 7.29e-18 | 53.47 | uncharacterized protein LOC120069734 [Benincasa hispida] | [more] |
| XP_038904397.1 | 7.19e-05 | 61.36 | uncharacterized protein LOC120090760 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
