IVF0014774 (gene) Melon (IVF77) v1

Overview
NameIVF0014774
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription initiation factor IIA subunit 2
Locationchr03: 584401 .. 592482 (-)
RNA-Seq ExpressionIVF0014774
SyntenyIVF0014774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTGCATCACATTTCTCCATACATAAAATACAAATATATGGTTTTCAAATCTACGTTTTCCAATTCTCTATTAAGCACCCGAAATTCCCTTTCGTTTTATTTTGTTTGTTCGTTTCAATAGAAAATGTAAAGGAGGAAGGAAAAGCAATAGCAACGGGAAACCCTAACCACGATCTTCTTCTCCCTCTGTTTCTTGCAACACCCCTTCTCTGCGTGTTGCTTCACCCGGCTAAGTCATCCTCTCTCCAGCCACGACTCGGAGCGGCGCGACACCTTCCCTCCGGCATCCCATTATTGTCCTCGCCTGCGTGCTTCTTCGTTAACCACGCGACACTCCAAGTTCCGGCTACACCGGCGCACAATCCTTCTGCGGCGGTGACCGTCGACGCGAAACCCACAACGTTGACGATTTCAGAACCTACACGGTCTAAACACCTTGGCAGCGACATTTTCCTCTCTTTCGGCGAGGTTCGTCACTTATTCACTGTTTTTCAATGTTGAATTTAATTTAGCCACTTCTTTACGGCTCGTTATAGGTTGGTAGTATTAAGCATATTCGACACTAACCAGCAAGGATTCGGGTTGTGTTGGGTAAGAATCAGCGGGTATAACAATCTAAACTTCTTTTGAACTTGTTTAAGGTTCTTTAGATATTTGTAGATTTGGGATAGTTCCGAAACTATTCGGTCATCTTGCAGCAAGGACTCGAGTCTGTCTTGTTGAGTTTTTGTTGTTAGAACTCCGTTTAGAGTCTTTTGAATTGGATCTACGTAGTTGGAATGAGTTTTTAACTCATGGATATACTTTATTTGTAGTTTAGACTTGGTTTGTGGTGCTTGAGTTGAGGTTTAAGGTTACATTTGGTTAGACTTAGATTACTCATTCAGTCTCTGAATAAGGTTTCAAACTAAGTTCTAACATTTGAAACTGTGTTTTACCATGTCAAGAGAATAATAGACACTTTCAATTGATGAAATGAAAAGAAACTTTTGCTCAAGGAAAACAAACTCCGGAAGGGAGTGGAATACTAGAGACAAAAAAAAAAAAAAAAAGAAAACAACAACAAATATAAAATAAATAAAAAAGAAAAGCATGACTGTTTTGCTCTAACAGTTGGAACCATGTTTTATGATTCGCTGAAATGCTATCAAGTGTCTATTGATATAAGCATGGTGTGTAGATATTTGAACACATGTATGATTAATGTTGAGAAAACAACACTATGTATGTAGTTTTTGCTACTGTTTGTGTGATCTTGTGGGTTTTATGGGGGAGACGGAATAATAGGAATTTTAGAGGTATGGAGAGGGACCCCAAGGATCTTTGGTCTCTCATTTGTTATCGTATTTTGCTTTGGGCTTCATTATCGAAAGCATTATGTAGTTATTCTTTGGGTCTTATTAACCTTAGCTGGGATCCTTTTTTGTAATGTGATTTTCTTGGGGCTTGGCTTTTTCCGCCCTTGTAATTTTTTCATTATCTCTCAATGAAACTGTTTATATTTAAAAAAACATTACTTATGTAGTTTTAAGCATAAAGCATGTTGTAGATGAGTATCAAGGGCTTTGGTTTAGTTAGGTTCGATGCTATGAGTTTAGAATCGAAAGTACTAAAATTCTTAAGAGCTTTGATGGCCCTTGGTGGACTCAGTTGGGCCTGAAGAAGAGGTCGATGGCCTTGGATAGTATCGGTTGGAACCAATGGAGAGGTTGATGGCCATGGATATATTGGTTAAGGTTGACAAAGACTGTCTGTGCCCTTGGAAGAAGTCAATGTTGGCGACAAAGAGCATTTATGGCCTTATATAAAGTCTGTTGGGGCCAATAGAGAATGTCGGTGGTCCTGAGCACAATTAGTTGGGGCAATGTGTCTTTGGGAAATGTTCATAAAGTTTTGCGAGAGTCAAGGTGGAATGTTTATTTAATTTGAGAAGTTTGATTTGAAACTATGTATGCCTTATATGACGTGATTGACCTTTACTGTTGTTGTATGTTTTTGCAATAGTTATATGTATGTTGTTTGGTGGCCCTTTAGATGTGGGCTATTGCATTGGAACATCCTCGAGGATGACACTAAAAGGTTGTTCTAAGACTTTTTGAAGAAGGGCATGCAATGGCAATCGTAATGAGACTTATATCTGCTTGATTGCTAAAAAGGTCGATGTCAAGAGGGTTAGGGGTCATAAGCTGATTAGCCTTACCACATGTTTATACAATATTATTGCCTAGGTGCTCTAGAAAAGGTTGAAGAAAGTTCTCCCTCATACGTTTTCCATGAACCAATTTGCTTATGTGGCAGACTGTTGATGCCTCCCTAATTGCTAATGAGCTGATTGACCTCTACGCTAGATCCAAAACCAAAGTTGTGGTAATTAAACTTGATATTGGGAAGACATTTGATATTGTTGATTGAGAGTTTCTCGACAATATTATGGTGTCAAGGATTTTGGCAACACTCGGAGAAGATTGAGTATGGGTTGTTTGTCAACAACTAACTTGTCCATTATTATCAATGGATAAACAAAGCCACTCGTGGTCGCCTTTCTTATTCACCTTGGTGGTTGATTGCCTTAGTAGAGTGCTCATGAAAGGATTAGACGCTAATCACATAGATGACTTTGTTGTCAGAAATTATGGACTTTGGGTTATTCATGTACAATTTCATGATGATACTATCCTTTTCTCCCTTTTTAATGAGGAAATGCTTGCCATTTTCACGCCCTGCCCCAAGATCATTTCGTGCAATTCATGTGGAGGCACGATCACATAGATATTCCACACGTATATCTCCGTGAGATAGCACGCATAACACTTAGTAAGCGAAAAACACACACCAAACTAAACGCAAGAAGAGAACTCATTTAAAATCACAAATACTTCATTGATATTGATGAAAAATTACAATCAAAACAAGTAGAAAGTTTATTCAAACTAAAATGTCTTAAAACAATATCTTGATCATCTCGCCTAAGACTCTTCATATTATGTGAACTGATTGAAAATATTAACAAGTTGATACAATGCAATTATGGCACGAAAGGCATTCAATTTGGCAAGTCAAACATTGGCTGTCCTTTGCTACCTGAGGGGATAAAACAAAACATTTGAAAGATTAAACAAAATTTCTAGTGAGTGGGTTTTTCATCAATATATTTATAATAAGTAAGTTTTCAATGACGCATTGTAATTCTTTTCGCCAAACCATGCGATATAAATAGTTATGCATTTAGGAAAATAAACATTGAGTCCAAATCAAATCATCTCACCCTTTCAACGATATACACAATCTCAATTTCATTAACAAACATTTATGAATCTTTCGGAAATCCTTTCTTTTCAAATTATTCATATTAGCTCATATCACATAAGCATGTATCTCGCAGAATCCATCGTATAACTCATGTTGCAGAATCATTCTGCATGTTTTATTATATCTTTGTACATTTTCTACAACTCAAACGTTTACCACACTCTTTTGCTTGTTTGCACCTATGCGGAGTGATCTCAATGCAACAACAATTCACCATCAATTACATTATGCATAACGTGTATTTCAATGCCAGATCACGTAGTAAGCAAAGGACATCCTATACTAGATCACACAACAAGTATGGGACATCCTATTTCAGATTACACAGCAAGAATAGGACATCTTATCCCAGATCATATGGCATCCCACACCAGAACACACATCAAGTGTGAGGCATCTCATCTCATAGGGTACCAAAGATCATCTCATCATCGCATTTTAGTTCATTTTCAATTCAATTTATTCATAACTCAATAAAATTTAAGAATTTGAGATTGTAAGGGAAATAAGGGAATTCAAGAATTCAATAATAGAATATATAAGGATTTAAACATAGTGGAAATACTTTTAGTTTGAAAACATTGTTAAGAAGAACCACTTACAATCAATTTACTTCCTCGCCTAGAACCCTTAGCCAAAGTTCCCTTACACCTTCTTGCAATTCCTTTTCGAACTCAGGCTTGTAATGGATTTATGGAAATCTTTGAAACTCTCTCAATTCTTTTTTAAGTGGACACAAGGTTCAACAACTCTAAAAAATGGTCGGACTTCTCCTATTTATAAGCTCTCCGGTGAGACTTCCCATGCTGGAACGATTACTTCTGCCCGACAATGATACTCAACCATTAACAAAACGCCACGTGCTACTGCCATCTCCTTATCCTGAACTCAAATGGATGGCAAGGTCAAAACGCCACGTGCTCATATCACCTTTCAGTTCAATGCATAGTTCCTTTGCGTCTCCTAGCCAAAATGCGATGTGCAATGTTCTTTGCAAATATTCCAATCGCTAGCTTCCATCGCACACAGTTTCATCGCATAACTCAATCTCAAGGCGATCAGGGTCTCGCAGCTATCCAGTCTTTTGAGTAAACATTTGGTTTTTGCATCAACCACTCGAAGTCAATTTATGGGCATACAATTAGACTATGGATCAATTATTTCTAAGGCTGCTTCTTTTGGCTATAAGGCTGACACCTGGCCTTCAACTTATCTTAATTTAACCCCTAACAATAAACCATTCTCTTATCTTTTTGGGAGCCCATCATTTGGAACAAAAAAGTGCCTAAATAATTAGAGTCATAATTATATTTCCAAAGAAGATCAACTCACATTAATCTAAGCCACACTTAGCAATCGTTCCACATCTTTCCTCTATATTTAAGATTTCTTCGAAGGTGGTTGATCAGATTGAGCAACTTCTTAGGAACTTCCTCTGGAATGGACATAATGATAAGAGAGGTATTCACTCTATTAATTGGCGAAAGGTTAAACTCCCTACTTGTGAAAGGGGCAAGGAAAGGAACAAGGGTCTTTTGGCAAAATGGATATGGAGATACCAATTTGGGAGAGACGCCCTTTGGAGGTACCTTATCGATGCTAAATATGGCTCCCCATTTTAACCACAAAGTAGATTCTTTAAGTAGTCTAAAGGCCCGTGGACATATATTGCAAAATAGAGTTCATGTTATTGACAATGGTGAAAGCACATCTTTCTGGAATGATTTTTGGGTCAAGAATGCTTTTCCTCAACCGTTTGCCCTATTTGGGCAAAAGGAGGTCTCCATTGCACGCTGTTGGAATGTTGACTATGAAGCATGGGACCTTGGATTGAGACCAAACCTTAATGATGATGAGGTCAATGAATGGTCTATTTATTCAAATTACTTTTGCCCCCTAACAGGCCCACGGCAGATGACATGTTGAGATGGATTTTTGGACAAATCTAGCAAGTTTACTTTTAAAGTGCTCTGTCATCACCTTGGTAATGACGAGAATTCAGCCCTTCCTAAGGATATTTGGAGAGGCCCTATTCCCAAAAAGATTTAGTTCTTATGAAGGGTCAGTTATGGTAGCATCAATATGACCGGTGTTCTTAGCAAAAAAGCCCAACAATCCACCCCAAATTGGTGTATTCTTTGCTACCATTGCAGAAAACCCCATCATGCACATATTGGTCTATTGATGGAAATTTTATCATGCTTCAACTATCACGTGGTTTTCTCAAACAATCCTTTCATCCTCTTGAACTTGCTTCCCACTGGCCATGCTTTCAAGAATGAGAAAACGATCTTGTGGACCTCCACCATCAAAACCTTCCTTAGGCTTATTTGGAATGAAGGAAACCATTGCATCTTCAAAGATAAAAAGATGCAATGCATTCTAATCTTTGATCACCTTTTGTATATTTTGCTTTCTTGGTGTAAATTTCTTTCTTTCTTTTGTGATCACAGCCATGCATCTTTTATTTCATAGTGGAATAACATTGTATTATCCCTCAAGAAATCTGTTGCTCTTTGTAATTTCATACTATCATTGAAATTATGATTGTATGTTTCTCATACAAAAGGTGTGGGCTACGTACTAGTAAAAGTTTGTACTGGCCTCCCCAGATTTTGTAGAAGTTGACGGTGACGAGTATTGCAACCTTGGTGATGTTGAAGAGAGTGTCTGAGAAAGATTGGCTATTAGGCATATGTTATTGTTGGTTTCTTGCTCTTTATAAGATTGTTTCACTCGAACTTTGAAAATTGAAACCTTGTTTTAGATTCAAGTAGGTTTTTCAATTGGATTTGAGTTGAGAGTTTGTAATAGACTTTAGTGGTTTGTGCTGCTTGAGTTTGACATTTGTCCGAGTTTTTTTAGTTTCAGAAACTTTTTTTGAATTAGACTTGGGAGCATTGAATATTACTTTTCTTGAATGATATTGAATCCCAAAAAGTTGGTGGTATTTATGTTTATATTGTTATGTTGCTGAAATTTTTATAAAGTCGTACAAGTTAGAAGTCAAATTTTGGTAATGTTTCCTAAGTTGAAAATAAAATTGGTTGAAACTAGTCTGAGTGGTCCATGTTTATCTGTTTTTATCTTTCCTTTTTGAATTGATCTCTCGCTTTGATTTTGAAGATTTTTCCTGCTTTCTCGAATTCTGACGATATGTTCCAAAATTTTCTGAGTTTTTTTTCAGTTTCAGATTGTGTATTTTTAAGCTAGATTTTCTATCTTAGCTAAAGAGCTTCAATATTTAGCAGATCTTGATTTTCGAAGAAGAATGGCAACGTTCGAACTCTACCGCAGATCAACAATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGATAAGGTACAACCAAAGTTGTTTCTTGTTTGGAGATCTATATTTTGGATTTGTATTTAGGATTTAGGTCTTGTTTGGTTTAATTTTGTTCTGCTTTTGGCTTTTGCAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGTATGTTTTTTTGGCTTATGAATTAGACAAATCTTCAATGCTATAGATTTATGTTGCTAAATAAAGTCAACATTATAAACTTGAAACAAAATTCTACTGATGAGAGGAATTGGTTGTGTTTTGCTGTTCTCAGATTGTTCTCTATGTGCCCTAGTGCATGTCTAGCCTCGAGTCAAATTGTCTGTGAAGAACTCATCCATGTGTCAAATGCATAATAGAATATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAGCCTTTTGGTTGCCTCAAATGAATGGAGAGCCACGAGTAAGAGTTGGTAGTTTCTTGGTGGAACTTTTAATATCCGTGTGATTAGGTTGCTTGGGTTCATTCCATTCCTTGCTTTGTCATCTCTTGATTCTTGAATAAGTTTCTGTGGAATAAACTTCGTAATTCTTTGTTTTTTTGCAATCTGAGGACAAAGTAATAACTGCTTGTTAGGGATGCGGCCATATGAGGTTCTACAATGAGTCCTCTGCTATTGTTGGTTTCAAGCTATATATTTGATCCAATGCTATGTCGGATTTTCTAACAATACTTAGCTGGAAGTTCATCATACATCAATTGGAAATTATGAAATCGTAATCACACAGATTATTAGGAGTTGTGTAGTTAAACATGCATGGTATTGTGTTTAGGTCTTAGAACTCAAGGACTCAAACATACAACCTATAGAACAGAACCTGTTCAACTATGGTCGTGGATTGTGTTTACGTCTTAAAAGAAACTCTCTTATGGTGATTTCTAAACCTCTTAGCCCATTTACTATCTCGTGTTGCAACAGGGGCATTTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTACAGGATGCCTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAAGCTTTCAGACATCAGGGTTTATTGGATGAAAATTGCATAATTATTTGCTGGTGATGGAGGGAAGAATAGTCAGTCACGGTGAGGAGGACATGGCCATCCGGGAAGAGATTCAAACGTGATTTTGTAAATTCAGTCAGTTACATTGACCATACATTTGACTGTAATTGGCTTCTAAAGTTGATTAGATGATAACATTGATACGACCCTTCTTCAAGTTCAATGATAATAAAACATAATGATATATGTTTCAATGTTATGCTATTGATTT

mRNA sequence

ATTCTGCATCACATTTCTCCATACATAAAATACAAATATATGGTTTTCAAATCTACGTTTTCCAATTCTCTATTAAGCACCCGAAATTCCCTTTCGTTTTATTTTGTTTGTTCGTTTCAATAGAAAATGTAAAGGAGGAAGGAAAAGCAATAGCAACGGGAAACCCTAACCACGATCTTCTTCTCCCTCTGTTTCTTGCAACACCCCTTCTCTGCGTGTTGCTTCACCCGGCTAAGTCATCCTCTCTCCAGCCACGACTCGGAGCGGCGCGACACCTTCCCTCCGGCATCCCATTATTGTCCTCGCCTGCGTGCTTCTTCGTTAACCACGCGACACTCCAAGTTCCGGCTACACCGGCGCACAATCCTTCTGCGGCGGTGACCGTCGACGCGAAACCCACAACGTTGACGATTTCAGAACCTACACGGTCTAAACACCTTGGCAGCGACATTTTCCTCTCTTTCGGCGAGATCTTGATTTTCGAAGAAGAATGGCAACGTTCGAACTCTACCGCAGATCAACAATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGATAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTACAGGATGCCTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAAGCTTTCAGACATCAGGGTTTATTGGATGAAAATTGCATAATTATTTGCTGGTGATGGAGGGAAGAATAGTCAGTCACGGTGAGGAGGACATGGCCATCCGGGAAGAGATTCAAACGTGATTTTGTAAATTCAGTCAGTTACATTGACCATACATTTGACTGTAATTGGCTTCTAAAGTTGATTAGATGATAACATTGATACGACCCTTCTTCAAGTTCAATGATAATAAAACATAATGATATATGTTTCAATGTTATGCTATTGATTT

Coding sequence (CDS)

ATGGCAACGTTCGAACTCTACCGCAGATCAACAATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGATAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTACAGGATGCCTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ
Homology
[Close]
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-48
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-26
Identity = 52/99 (52.53%), Postives = 77/99 (77.78%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++  KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++      +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match: Q54ND1 (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-25
Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K   KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDASFKNEDSNEV--VGRIKIVACDSKL 104
           HTYRFCD+VWTFIL++A FK E +NE+  V R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTE-ANEIVKVDRVKIVACDANV 108

[Close]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match: A0A0A0LQ01 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401490 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match: A0A1S3B2V9 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485408 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match: A0A1S3B2F6 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match: A0A0A0LMF8 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of IVF0014774 vs. NCBI nr
Match: XP_004138656.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_008441205.1 PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis melo] >XP_031736663.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63089.1 hypothetical protein Csa_022262 [Cucumis sativus])

HSP 1 Score: 213 bits (541), Expect = 2.06e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. NCBI nr
Match: XP_038884625.1 (transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida] >XP_038884626.1 transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida] >XP_038884627.1 transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 209 bits (531), Expect = 6.91e-68
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA FKNEDSNE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSNETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. NCBI nr
Match: XP_008441202.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_008441203.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 206 bits (524), Expect = 8.08e-67
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. NCBI nr
Match: XP_004138655.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63090.1 hypothetical protein Csa_022522 [Cucumis sativus])

HSP 1 Score: 206 bits (523), Expect = 1.15e-66
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 205 bits (522), Expect = 1.63e-66
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS+E VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVACDSKLLSQ 106

[Close]
BLAST of IVF0014774 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 190.7 bits (483), Expect = 6.2e-49
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of IVF0014774 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 190.7 bits (483), Expect = 6.2e-49
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:
BLAST of IVF0014774 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2XZI23.9e-4888.68Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3... [more]
Q0DLD33.9e-4888.68Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX... [more]
Q392368.7e-4888.68Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
O749484.2e-2652.53Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
Q54ND14.7e-2555.88Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446... [more]
BLAST of IVF0014774 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ011.3e-51100.00Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A1S3B2V91.3e-51100.00Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A1S3B2F61.3e-4996.23Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0LMF81.6e-4996.23Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A6J1J1003.7e-4995.28Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of IVF0014774 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138656.12.06e-69100.00transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_008441205.1 ... [more]
XP_038884625.16.91e-6898.11transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida... [more]
XP_008441202.18.08e-6796.23PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_0084... [more]
XP_004138655.11.15e-6696.23transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 ... [more]
XP_038897043.11.63e-6696.23transcription initiation factor IIA subunit 2 [Benincasa hispida][more]
BLAST of IVF0014774 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24440.16.2e-4988.68transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
AT4G24440.26.2e-4988.68transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
e-value: 1.1E-22
score: 79.8
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 4..49
e-value: 1.0322E-22
score: 81.0728
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 1..106
e-value: 5.1E-48
score: 159.8
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 60..101
e-value: 6.2E-21
score: 74.3
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 59..102
e-value: 4.8876E-21
score: 76.9027
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 55..105
e-value: 2.8E-22
score: 80.3
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
IPR009083Transcription factor IIA, alpha-helical domainGENE3D1.10.287.190coord: 3..54
e-value: 3.1E-24
score: 86.6
NoneNo IPR availablePANTHERPTHR10966:SF8TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
NoneNo IPR availableSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014774.1IVF0014774.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
biological_process GO:0006413 translational initiation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0017025 TBP-class protein binding
molecular_function GO:0003743 translation initiation factor activity