Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGGTGTCAGGTGATGATTCCGACGGAAGGGTTCAAGTGCTTTGAGAGTCTCTGATGTTCCATCGCTGGTTTGCACATTTTCCTTTCTTAAATTTTTTTGTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTACGGTCAGCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGACAACGATGAATCATTGACAGGACCTCATGCAGTTGATTCGGCCAAGAAAGTTGGTACCTTGAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAGTGTTTTGAATCGCCTTTAGACGCTTCTAATAGACAGACTACGAGAAACCCTGAGCCTTCTCAATAGGTTGGTGAAAATGTGGTTTCAAACTTATTCAAAAAAATAGCCTTATGTATGTGGGAGGATATACAAGATAAGATCATGCGAATTCCTTTTGAATATATCCCAAGACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA
mRNA sequence
ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA
Coding sequence (CDS)
ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA
Protein sequence
MAATLEEETKEDKDESDSSKSDRHWKRLLKKAKTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLKLRLEIATILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDVQSSYSSQLLSIDKAR
Homology
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match:
A0A5D3BZM5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00430 PE=4 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 124/239 (51.88%), Postives = 130/239 (54.39%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
MAATL+EE E KDESDSSKSD HWKR LKKA
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320
Query: 61 --------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVS 120
KTPVSKPA+QSLR SAL E IRR KMT+GGK IGSPPSKGD CPKEPLQKVS
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGKSIGSPPSKGDACPKEPLQKVS 380
Query: 121 STHAPLK----------------------------------------------------- 147
S HA LK
Sbjct: 381 SAHASLKYSESPLDASNRQITRNPEPSQWVGEKVVSNFFKKIDLCMWEDIQDKIMRTPFE 440
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match:
A0A5D3BT42 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00370 PE=4 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 120/224 (53.57%), Postives = 130/224 (58.04%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------KTPVSKP 60
MAATLEEE E K++SDSSKSD HWKRLLKKA KTPVS+P
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236
Query: 61 AKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPL--------- 120
A+QSLR SAL E I RGKMTVGGKDIGSP SKGD PK PLQK+SSTHAPL
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296
Query: 121 ------------------------------------------------KLRLEIATILSG 147
+LR +IAT+LSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match:
A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 6.0e-42
Identity = 120/254 (47.24%), Postives = 128/254 (50.39%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
MAATLEEE E KDE+DSSKSDRHWKR LKKA
Sbjct: 551 MAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDPDERGSSALGSPLNAHLEGLVE 610
Query: 61 -----------------------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPP 120
KTPVSKP +QSLR S LLE IRR KM V GK I +PP
Sbjct: 611 LDNDESLTGPHVVDSTIEGVDTSKTPVSKPVEQSLRPSTLLEEIRRSKMIVRGKSIRNPP 670
Query: 121 SKGDVCPKEPLQKVSSTHAPLK-------------------------------------- 147
SKGD CP+E LQKVSSTHAPLK
Sbjct: 671 SKGDACPEESLQKVSSTHAPLKYSESPLAASNRQITRSPEPSQWVGEKVVSNFFKKTALC 730
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match:
A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 120/241 (49.79%), Postives = 126/241 (52.28%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
MA LEEE KE KDESDSSKSDRHWKR LKKA
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685
Query: 61 ----------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQK 120
KTPV+KPA+QSLR SAL E IRRGKMTVGGKD+ S SK VCPK L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745
Query: 121 VSSTHAPLK--------------------------------------------------- 147
VSSTHAPLK
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match:
A0A5D3BV87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00330 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 118/240 (49.17%), Postives = 129/240 (53.75%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
M+ATLEEE E KDESD+SKSDRHWKR LKKA
Sbjct: 128 MSATLEEEINEHKDESDNSKSDRHWKRPLKKAKVSGDDPKGRGSSALVIPNVPPLSPLNA 187
Query: 61 ------------------------------KTPVSKPAKQSLRSSALLEVIRRGKMTVGG 120
KT VSKPA+QSLRSS LL+ I R KMTVGG
Sbjct: 188 QLEGLIELDSDESLTEPHAVDLVIKEVGTLKTIVSKPAEQSLRSSTLLKKICRSKMTVGG 247
Query: 121 KDIGSPPSKGDVCPKEPLQKVSSTHAP--------------------------------- 147
KDIGSPPSKGD PKEPLQKV+ + P
Sbjct: 248 KDIGSPPSKGDAYPKEPLQKVTRSPEPSQWVGKKVVSNFFKKTTLCMWEDIQDKIMRTPF 307
BLAST of IVF0014734 vs. NCBI nr
Match:
KAA0035005.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 194 bits (493), Expect = 1.32e-57
Identity = 120/224 (53.57%), Postives = 130/224 (58.04%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK---------------------TPVSKP 60
MAATLEEE E K++SDSSKSD HWKRLLKKAK TPVS+P
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236
Query: 61 AKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLK-------- 120
A+QSLR SAL E I RGKMTVGGKDIGSP SKGD PK PLQK+SSTHAPL+
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296
Query: 121 -------------------------------------------------LRLEIATILSG 146
LR +IAT+LSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356
BLAST of IVF0014734 vs. NCBI nr
Match:
KAA0031667.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 194 bits (493), Expect = 2.30e-56
Identity = 124/239 (51.88%), Postives = 130/239 (54.39%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK--------------------------- 60
MAATL+EE E KDESDSSKSD HWKR LKKAK
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320
Query: 61 ---------TPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVS 120
TPVSKPA+QSLR SAL E IRR KMT+GGK IGSPPSKGD CPKEPLQKVS
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGKSIGSPPSKGDACPKEPLQKVS 380
Query: 121 STHAPLK----------------------------------------------------- 146
S HA LK
Sbjct: 381 SAHASLKYSESPLDASNRQITRNPEPSQWVGEKVVSNFFKKIDLCMWEDIQDKIMRTPFE 440
BLAST of IVF0014734 vs. NCBI nr
Match:
TYK29708.1 (hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa])
HSP 1 Score: 179 bits (454), Expect = 7.41e-53
Identity = 109/188 (57.98%), Postives = 121/188 (64.36%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK----------------------TPVSK 60
+AATLEEE KE KDESDSSKSD HWK+ LKKAK TPVSK
Sbjct: 2 IAATLEEEIKEHKDESDSSKSDHHWKKPLKKAKVSGDDLDKKGSSALGVPNVPPLTPVSK 61
Query: 61 PAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLKLR---LE 120
P +Q LR SALLE I R KMTVGGK IGSPPSKGD CP+EPLQKVS T+APLK L+
Sbjct: 62 PTEQFLRPSALLEEIHRSKMTVGGKSIGSPPSKGDACPEEPLQKVSLTYAPLKYSESPLD 121
Query: 121 IAT-----------------ILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDVQSSYSSQ 146
+ + + F+K GLT LEEYLN+YLKRVDNFNDVQSSYS+Q
Sbjct: 122 ASNRQITRNPEPSQWVGEKVVSNFFKKTALYGLTTLEEYLNSYLKRVDNFNDVQSSYSAQ 181
BLAST of IVF0014734 vs. NCBI nr
Match:
KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 174 bits (441), Expect = 1.51e-52
Identity = 107/174 (61.49%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK----------------------TPVSK 60
M A LEEE KE KDES+S KSDRHWKR LKKAK TPVSK
Sbjct: 1 MDAALEEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSK 60
Query: 61 PAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLK------- 120
PAKQSLR S LLE IRRGKM V GKDIGSP SKGD CPK PLQKV+ST APLK
Sbjct: 61 PAKQSLRPSTLLEEIRRGKMIVVGKDIGSPSSKGDACPKAPLQKVNSTPAPLKFSESFLD 120
Query: 121 --------------LRLEIATILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDV 131
LRLEI T+LS EKIHADGL PLEEYLN+YLKR DNFNDV
Sbjct: 121 TSNRQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEYLNSYLKR-DNFNDV 173
BLAST of IVF0014734 vs. NCBI nr
Match:
KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 179 bits (455), Expect = 1.96e-52
Identity = 116/227 (51.10%), Postives = 126/227 (55.51%), Query Frame = 0
Query: 1 MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK--------------------------- 60
MAATL+EE KE KDESDSSKSDRHWKR LKKAK
Sbjct: 46 MAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNA 105
Query: 61 -------------------------------TPVSKPAKQSLRSSALLEVIRRGKMTVGG 120
T VSKP +QSLR SALL+ IR+ KMTVGG
Sbjct: 106 HLEGLVELDSDKSLTGPYAVDSTIEGVGTLKTTVSKPIEQSLRPSALLKEIRQSKMTVGG 165
Query: 121 KDIGSPPSKGDVCPKEPLQKVSST-----------------------HAPLKLRLEIATI 146
K IGSPP K D CPKEPLQKV S + P +LR EI T+
Sbjct: 166 KGIGSPPFKADACPKEPLQKVVSNIFKKTTLCMWEDIQDKIMRTLFEYIP-RLRPEITTV 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BZM5 | 1.2e-45 | 51.88 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3BT42 | 1.2e-45 | 53.57 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3D2A0 | 6.0e-42 | 47.24 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5D3C3D7 | 1.3e-41 | 49.79 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5D3BV87 | 2.3e-41 | 49.17 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035005.1 | 1.32e-57 | 53.57 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative m... | [more] |
KAA0031667.1 | 2.30e-56 | 51.88 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative m... | [more] |
TYK29708.1 | 7.41e-53 | 57.98 | hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa] | [more] |
KAA0050984.1 | 1.51e-52 | 61.49 | hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa] | [more] |
KAA0054388.1 | 1.96e-52 | 51.10 | hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681... | [more] |
Match Name | E-value | Identity | Description | |