IVF0014734 (gene) Melon (IVF77) v1

Overview
NameIVF0014734
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr10: 5275586 .. 5276445 (+)
RNA-Seq ExpressionIVF0014734
SyntenyIVF0014734
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGGTGTCAGGTGATGATTCCGACGGAAGGGTTCAAGTGCTTTGAGAGTCTCTGATGTTCCATCGCTGGTTTGCACATTTTCCTTTCTTAAATTTTTTTGTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTACGGTCAGCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGACAACGATGAATCATTGACAGGACCTCATGCAGTTGATTCGGCCAAGAAAGTTGGTACCTTGAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAGTGTTTTGAATCGCCTTTAGACGCTTCTAATAGACAGACTACGAGAAACCCTGAGCCTTCTCAATAGGTTGGTGAAAATGTGGTTTCAAACTTATTCAAAAAAATAGCCTTATGTATGTGGGAGGATATACAAGATAAGATCATGCGAATTCCTTTTGAATATATCCCAAGACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA

mRNA sequence

ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA

Coding sequence (CDS)

ATGGCTGCTACTCTCGAAGAGGAGACAAAGGAGGATAAAGATGAGAGCGATAGTAGCAAAAGTGATCGTCATTGGAAGAGACTTTTGAAGAAAGCAAAGACTCCCGTCTCTAAACCAGCCAAACAGTCCTTACGTTCATCTGCTCTTCTCGAGGTGATTCGTCGAGGCAAGATGACAGTGGGAGGAAAAGACATTGGGAGTCCTCCATCCAAAGGAGATGTCTGTCCTAAAGAACCCTTACAGAAGGTCAGCTCGACACATGCTCCCCTTAAACTTAGGCTAGAAATAGCAACAATTCTTTCGGGGTTTGAAAAGATCCATGCAGATGGCTTGACTCCTCTTGAAGAGTATCTAAATAATTATCTTAAGAGGGTAGACAATTTCAACGATGTGCAATCTTCATATTCTTCACAGTTGTTGTCAATAGATAAGGCTCGTTAA

Protein sequence

MAATLEEETKEDKDESDSSKSDRHWKRLLKKAKTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLKLRLEIATILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDVQSSYSSQLLSIDKAR
Homology
BLAST of IVF0014734 vs. ExPASy TrEMBL
Match: A0A5D3BZM5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00430 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 124/239 (51.88%), Postives = 130/239 (54.39%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
           MAATL+EE  E KDESDSSKSD HWKR LKKA                            
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  --------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVS 120
                   KTPVSKPA+QSLR SAL E IRR KMT+GGK IGSPPSKGD CPKEPLQKVS
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGKSIGSPPSKGDACPKEPLQKVS 380

Query: 121 STHAPLK----------------------------------------------------- 147
           S HA LK                                                     
Sbjct: 381 SAHASLKYSESPLDASNRQITRNPEPSQWVGEKVVSNFFKKIDLCMWEDIQDKIMRTPFE 440

BLAST of IVF0014734 vs. ExPASy TrEMBL
Match: A0A5D3BT42 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00370 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 120/224 (53.57%), Postives = 130/224 (58.04%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------KTPVSKP 60
           MAATLEEE  E K++SDSSKSD HWKRLLKKA                     KTPVS+P
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  AKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPL--------- 120
           A+QSLR SAL E I RGKMTVGGKDIGSP SKGD  PK PLQK+SSTHAPL         
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296

Query: 121 ------------------------------------------------KLRLEIATILSG 147
                                                           +LR +IAT+LSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356

BLAST of IVF0014734 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.0e-42
Identity = 120/254 (47.24%), Postives = 128/254 (50.39%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
           MAATLEEE  E KDE+DSSKSDRHWKR LKKA                            
Sbjct: 551 MAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDPDERGSSALGSPLNAHLEGLVE 610

Query: 61  -----------------------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPP 120
                                  KTPVSKP +QSLR S LLE IRR KM V GK I +PP
Sbjct: 611 LDNDESLTGPHVVDSTIEGVDTSKTPVSKPVEQSLRPSTLLEEIRRSKMIVRGKSIRNPP 670

Query: 121 SKGDVCPKEPLQKVSSTHAPLK-------------------------------------- 147
           SKGD CP+E LQKVSSTHAPLK                                      
Sbjct: 671 SKGDACPEESLQKVSSTHAPLKYSESPLAASNRQITRSPEPSQWVGEKVVSNFFKKTALC 730

BLAST of IVF0014734 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 120/241 (49.79%), Postives = 126/241 (52.28%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
           MA  LEEE KE KDESDSSKSDRHWKR LKKA                            
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----------KTPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQK 120
                     KTPV+KPA+QSLR SAL E IRRGKMTVGGKD+ S  SK  VCPK  L K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745

Query: 121 VSSTHAPLK--------------------------------------------------- 147
           VSSTHAPLK                                                   
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805

BLAST of IVF0014734 vs. ExPASy TrEMBL
Match: A0A5D3BV87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00330 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.3e-41
Identity = 118/240 (49.17%), Postives = 129/240 (53.75%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKA---------------------------- 60
           M+ATLEEE  E KDESD+SKSDRHWKR LKKA                            
Sbjct: 128 MSATLEEEINEHKDESDNSKSDRHWKRPLKKAKVSGDDPKGRGSSALVIPNVPPLSPLNA 187

Query: 61  ------------------------------KTPVSKPAKQSLRSSALLEVIRRGKMTVGG 120
                                         KT VSKPA+QSLRSS LL+ I R KMTVGG
Sbjct: 188 QLEGLIELDSDESLTEPHAVDLVIKEVGTLKTIVSKPAEQSLRSSTLLKKICRSKMTVGG 247

Query: 121 KDIGSPPSKGDVCPKEPLQKVSSTHAP--------------------------------- 147
           KDIGSPPSKGD  PKEPLQKV+ +  P                                 
Sbjct: 248 KDIGSPPSKGDAYPKEPLQKVTRSPEPSQWVGKKVVSNFFKKTTLCMWEDIQDKIMRTPF 307

BLAST of IVF0014734 vs. NCBI nr
Match: KAA0035005.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 1.32e-57
Identity = 120/224 (53.57%), Postives = 130/224 (58.04%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK---------------------TPVSKP 60
           MAATLEEE  E K++SDSSKSD HWKRLLKKAK                     TPVS+P
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  AKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLK-------- 120
           A+QSLR SAL E I RGKMTVGGKDIGSP SKGD  PK PLQK+SSTHAPL+        
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDIGSPLSKGDSYPKAPLQKISSTHAPLRFSESPLDT 296

Query: 121 -------------------------------------------------LRLEIATILSG 146
                                                            LR +IAT+LSG
Sbjct: 297 SNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVLSG 356

BLAST of IVF0014734 vs. NCBI nr
Match: KAA0031667.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 2.30e-56
Identity = 124/239 (51.88%), Postives = 130/239 (54.39%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK--------------------------- 60
           MAATL+EE  E KDESDSSKSD HWKR LKKAK                           
Sbjct: 261 MAATLKEEINEHKDESDSSKSDCHWKRSLKKAKSPLNAHLEGLVELDNDESLAGPHVVDS 320

Query: 61  ---------TPVSKPAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVS 120
                    TPVSKPA+QSLR SAL E IRR KMT+GGK IGSPPSKGD CPKEPLQKVS
Sbjct: 321 TIERVGTSKTPVSKPAEQSLRPSALFEEIRRSKMTMGGKSIGSPPSKGDACPKEPLQKVS 380

Query: 121 STHAPLK----------------------------------------------------- 146
           S HA LK                                                     
Sbjct: 381 SAHASLKYSESPLDASNRQITRNPEPSQWVGEKVVSNFFKKIDLCMWEDIQDKIMRTPFE 440

BLAST of IVF0014734 vs. NCBI nr
Match: TYK29708.1 (hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 7.41e-53
Identity = 109/188 (57.98%), Postives = 121/188 (64.36%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK----------------------TPVSK 60
           +AATLEEE KE KDESDSSKSD HWK+ LKKAK                      TPVSK
Sbjct: 2   IAATLEEEIKEHKDESDSSKSDHHWKKPLKKAKVSGDDLDKKGSSALGVPNVPPLTPVSK 61

Query: 61  PAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLKLR---LE 120
           P +Q LR SALLE I R KMTVGGK IGSPPSKGD CP+EPLQKVS T+APLK     L+
Sbjct: 62  PTEQFLRPSALLEEIHRSKMTVGGKSIGSPPSKGDACPEEPLQKVSLTYAPLKYSESPLD 121

Query: 121 IAT-----------------ILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDVQSSYSSQ 146
            +                  + + F+K    GLT LEEYLN+YLKRVDNFNDVQSSYS+Q
Sbjct: 122 ASNRQITRNPEPSQWVGEKVVSNFFKKTALYGLTTLEEYLNSYLKRVDNFNDVQSSYSAQ 181

BLAST of IVF0014734 vs. NCBI nr
Match: KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 1.51e-52
Identity = 107/174 (61.49%), Postives = 111/174 (63.79%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK----------------------TPVSK 60
           M A LEEE KE KDES+S KSDRHWKR LKKAK                      TPVSK
Sbjct: 1   MDAALEEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSK 60

Query: 61  PAKQSLRSSALLEVIRRGKMTVGGKDIGSPPSKGDVCPKEPLQKVSSTHAPLK------- 120
           PAKQSLR S LLE IRRGKM V GKDIGSP SKGD CPK PLQKV+ST APLK       
Sbjct: 61  PAKQSLRPSTLLEEIRRGKMIVVGKDIGSPSSKGDACPKAPLQKVNSTPAPLKFSESFLD 120

Query: 121 --------------LRLEIATILSGFEKIHADGLTPLEEYLNNYLKRVDNFNDV 131
                         LRLEI T+LS  EKIHADGL PLEEYLN+YLKR DNFNDV
Sbjct: 121 TSNRQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEYLNSYLKR-DNFNDV 173

BLAST of IVF0014734 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 1.96e-52
Identity = 116/227 (51.10%), Postives = 126/227 (55.51%), Query Frame = 0

Query: 1   MAATLEEETKEDKDESDSSKSDRHWKRLLKKAK--------------------------- 60
           MAATL+EE KE KDESDSSKSDRHWKR LKKAK                           
Sbjct: 46  MAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNA 105

Query: 61  -------------------------------TPVSKPAKQSLRSSALLEVIRRGKMTVGG 120
                                          T VSKP +QSLR SALL+ IR+ KMTVGG
Sbjct: 106 HLEGLVELDSDKSLTGPYAVDSTIEGVGTLKTTVSKPIEQSLRPSALLKEIRQSKMTVGG 165

Query: 121 KDIGSPPSKGDVCPKEPLQKVSST-----------------------HAPLKLRLEIATI 146
           K IGSPP K D CPKEPLQKV S                        + P +LR EI T+
Sbjct: 166 KGIGSPPFKADACPKEPLQKVVSNIFKKTTLCMWEDIQDKIMRTLFEYIP-RLRPEITTV 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZM51.2e-4551.88Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3BT421.2e-4553.57Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3D2A06.0e-4247.24PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3C3D71.3e-4149.79PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3BV872.3e-4149.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035005.11.32e-5753.57putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative m... [more]
KAA0031667.12.30e-5651.88putative mitochondrial protein [Cucumis melo var. makuwa] >TYK04444.1 putative m... [more]
TYK29708.17.41e-5357.98hypothetical protein E5676_scaffold3607G00180 [Cucumis melo var. makuwa][more]
KAA0050984.11.51e-5261.49hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa][more]
KAA0054388.11.96e-5251.10hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014734.1IVF0014734.1mRNA