IVF0014262 (gene) Melon (IVF77) v1

Overview
NameIVF0014262
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationchr05: 13275923 .. 13276084 (+)
RNA-Seq ExpressionIVF0014262
SyntenyIVF0014262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTGTGTCGGCATAAGGTTCGTCGGGACTGCCTCTCCCGATGTCACTATGGCTGACACATGTGACGGCGTCGGGAGAGGCATTTTCGACGTCGTATTGGTACAGCGTCGGAATGCCTCTCCCGATTCGGTTCTCCCGATGTTTTTCTCGACATCGTGA

mRNA sequence

ATGCGTTGTGTCGGCATAAGGTTCGTCGGGACTGCCTCTCCCGATGTCACTATGGCTGACACATGTGACGGCGTCGGGAGAGGCATTTTCGACGTCGTATTGGTACAGCGTCGGAATGCCTCTCCCGATTCGGTTCTCCCGATGTTTTTCTCGACATCGTGA

Coding sequence (CDS)

ATGCGTTGTGTCGGCATAAGGTTCGTCGGGACTGCCTCTCCCGATGTCACTATGGCTGACACATGTGACGGCGTCGGGAGAGGCATTTTCGACGTCGTATTGGTACAGCGTCGGAATGCCTCTCCCGATTCGGTTCTCCCGATGTTTTTCTCGACATCGTGA

Protein sequence

MRCVGIRFVGTASPDVTMADTCDGVGRGIFDVVLVQRRNASPDSVLPMFFSTS
Homology
[Close]
BLAST of IVF0014262 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.8e-04
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 3   CVGIRFVGTASPDVTMADTCDGVGRGIFDVVLVQRR 39
           C GIR +G AS D TMAD C G+GR I DVVLV+RR
Sbjct: 282 CFGIRSIGNASSDATMADACYGIGRDISDVVLVRRR 317

[Close]
BLAST of IVF0014262 vs. NCBI nr
Match: KAA0049602.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 2.80e-06
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 3   CVGIRFVGTASPDVTMADTCDGVGRGIFDVVLVQRR 38
           C GIR +G AS D TMAD C G+GR I DVVLV+RR
Sbjct: 282 CFGIRSIGNASSDATMADACYGIGRDISDVVLVRRR 317

The following BLAST results are available for this feature:
BLAST of IVF0014262 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0014262 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CX816.8e-0466.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
BLAST of IVF0014262 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049602.12.80e-0666.67reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcripta... [more]
BLAST of IVF0014262 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014262.1IVF0014262.1mRNA