Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA
mRNA sequence
ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA
Coding sequence (CDS)
ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA
Protein sequence
MVLEPNTDQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPRVVVGDLRTSHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLLK
Homology
BLAST of IVF0013432 vs. ExPASy TrEMBL
Match:
A0A1S4E325 (uncharacterized protein LOC107991791 OS=Cucumis melo OX=3656 GN=LOC107991791 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 75/126 (59.52%), Postives = 79/126 (62.70%), Query Frame = 0
Query: 1 MVLEPNTDQTKDNTTLDGNQTEETVVGTS-----VVAVDARISAAMDEWLCRLQTMPTNI 60
MV E + DQ DNTT DGNQ EET S V VDARIS AMDEW C LQT N+
Sbjct: 1 MVSEHDADQILDNTTFDGNQIEETGNDISETIATVDIVDARISVAMDEWFCHLQTTSANM 60
Query: 61 IPSPFPLSAPPRVV-VGDLRTS---HSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNF 118
I SPF A P V RTS H +QI PANPSLPPLSSST YNV H PLHV PPN
Sbjct: 61 IRSPFLSFASPHVAHEPSSRTSEPAHPIQIMPANPSLPPLSSSTTYNVLHVPLHVLPPNS 120
BLAST of IVF0013432 vs. ExPASy TrEMBL
Match:
A0A5D3DRM9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001270 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 0
Query: 3 LEPNTDQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPL 62
+ +D T DNTT DGNQTEET G S A +A I+AA+DEW LQT N+I F
Sbjct: 1 MRDKSDHTLDNTTCDGNQTEETAAGIS-AATNAWINAAIDEWFHNLQTTSRNLISQLFSS 60
Query: 63 SAPPRVV---VGDLRT-SHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLL 118
SAP + L T +H +Q+ PA+ ++PPLSSS Y+VPH P+HV PPN QPP L
Sbjct: 61 SAPSETIHVPPPKLHTPAHPIQMPPADLAMPPLSSSATYSVPHVPIHVLPPNSDQPPPL 118
BLAST of IVF0013432 vs. ExPASy TrEMBL
Match:
A0A5D3C1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00040 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 7.8e-16
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
Query: 1 MVLEPNTDQTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIP 60
MV E + DQT +NTTLDGNQTEE V S+V AV+A+IS AM+EW C LQT P N+I
Sbjct: 1 MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60
Query: 61 SPFPLSAPPRVVVGDLRTS--------HSVQITPAN-PSLPPLSS--STAYN 99
SPFP SAPPR VG+LRTS S T +N +LPP+ S +T+Y+
Sbjct: 61 SPFPSSAPPRAAVGNLRTSLSSSNHAGQSFSTTLSNLYALPPIGSAANTSYH 112
BLAST of IVF0013432 vs. ExPASy TrEMBL
Match:
A0A5A7U5T5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001050 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 0
Query: 9 QTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAP 68
+ ++NTT DGNQTEET S V AVDAR+SAAMDEW CRLQ P N PS SAP
Sbjct: 12 EIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAP 71
Query: 69 PRVVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 118
P ++ H+ +Q P NP + P SSS Y P A + V PPNF QPPLL
Sbjct: 72 P-------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121
BLAST of IVF0013432 vs. ExPASy TrEMBL
Match:
A0A5D3C8I9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00870 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 0
Query: 9 QTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAP 68
+ ++NTT DGNQTEET S V AVDAR+SAAMDEW CRLQ P N PS SAP
Sbjct: 12 EIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAP 71
Query: 69 PRVVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 118
P ++ H+ +Q P NP + P SSS Y P A + V PPNF QPPLL
Sbjct: 72 P-------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121
BLAST of IVF0013432 vs. NCBI nr
Match:
XP_016902631.1 (PREDICTED: uncharacterized protein LOC107991791 [Cucumis melo])
HSP 1 Score: 118 bits (295), Expect = 3.40e-30
Identity = 75/126 (59.52%), Postives = 79/126 (62.70%), Query Frame = 0
Query: 1 MVLEPNTDQTKDNTTLDGNQTEETVVGTS-----VVAVDARISAAMDEWLCRLQTMPTNI 60
MV E + DQ DNTT DGNQ EET S V VDARIS AMDEW C LQT N+
Sbjct: 1 MVSEHDADQILDNTTFDGNQIEETGNDISETIATVDIVDARISVAMDEWFCHLQTTSANM 60
Query: 61 IPSPFPLSAPPRVV-VGDLRTS---HSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNF 117
I SPF A P V RTS H +QI PANPSLPPLSSST YNV H PLHV PPN
Sbjct: 61 IRSPFLSFASPHVAHEPSSRTSEPAHPIQIMPANPSLPPLSSSTTYNVLHVPLHVLPPNS 120
BLAST of IVF0013432 vs. NCBI nr
Match:
TYK05873.1 (uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 92.4 bits (228), Expect = 1.08e-20
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0
Query: 1 MVLEPNTDQTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIP 60
MV E + DQT +NTTLDGNQTEE V S+V AV+A+IS AM+EW C LQT P N+I
Sbjct: 1 MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60
Query: 61 SPFPLSAPPRVVVGDLRTSHS 78
SPFP SAPPR VG+LRTS S
Sbjct: 61 SPFPSSAPPRAAVGNLRTSLS 81
BLAST of IVF0013432 vs. NCBI nr
Match:
TYK26198.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 96.7 bits (239), Expect = 1.88e-20
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0
Query: 8 DQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 67
D T DNTT DGNQTEET G S A +A I+AA+DEW LQT N+I F SAP
Sbjct: 6 DHTLDNTTCDGNQTEETAAGISA-ATNAWINAAIDEWFHNLQTTSRNLISQLFSSSAPSE 65
Query: 68 VV---VGDLRT-SHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLL 117
+ L T +H +Q+ PA+ ++PPLSSS Y+VPH P+HV PPN QPP L
Sbjct: 66 TIHVPPPKLHTPAHPIQMPPADLAMPPLSSSATYSVPHVPIHVLPPNSDQPPPL 118
BLAST of IVF0013432 vs. NCBI nr
Match:
KAA0050638.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 1.25e-17
Identity = 59/115 (51.30%), Postives = 68/115 (59.13%), Query Frame = 0
Query: 11 KDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 70
++NTT DGNQTEET S V AVDAR+SAAMDEW CRLQ P N PS SAPP
Sbjct: 14 QENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAPP- 73
Query: 71 VVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 117
++ H+ +Q P NP + P SSS Y P A + V PPNF QPPLL
Sbjct: 74 ------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121
BLAST of IVF0013432 vs. NCBI nr
Match:
TYK07795.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 1.55e-17
Identity = 59/115 (51.30%), Postives = 68/115 (59.13%), Query Frame = 0
Query: 11 KDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 70
++NTT DGNQTEET S V AVDAR+SAAMDEW CRLQ P N PS SAPP
Sbjct: 14 QENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAPP- 73
Query: 71 VVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 117
++ H+ +Q P NP + P SSS Y P A + V PPNF QPPLL
Sbjct: 74 ------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S4E325 | 4.6e-24 | 59.52 | uncharacterized protein LOC107991791 OS=Cucumis melo OX=3656 GN=LOC107991791 PE=... | [more] |
A0A5D3DRM9 | 1.4e-17 | 49.58 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3C1P7 | 7.8e-16 | 53.57 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U5T5 | 6.6e-15 | 50.43 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0... | [more] |
A0A5D3C8I9 | 6.6e-15 | 50.43 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G... | [more] |
Match Name | E-value | Identity | Description | |
XP_016902631.1 | 3.40e-30 | 59.52 | PREDICTED: uncharacterized protein LOC107991791 [Cucumis melo] | [more] |
TYK05873.1 | 1.08e-20 | 64.20 | uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa] | [more] |
TYK26198.1 | 1.88e-20 | 51.75 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0050638.1 | 1.25e-17 | 51.30 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
TYK07795.1 | 1.55e-17 | 51.30 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |