IVF0013432 (gene) Melon (IVF77) v1

Overview


Name	IVF0013432
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribokinase isoform X2
Location	chr04: 2399752 .. 2400108 (+)
RNA-Seq Expression	IVF0013432
Synteny	IVF0013432

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA

mRNA sequence

ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA

Coding sequence (CDS)

ATGGTATTAGAGCCTAATACTGACCAAACCAAAGACAACACAACTCTTGATGGAAACCAAACAGAGGAGACAGTCGTCGGCACTAGTGTCGTTGCCGTTGATGCTCGGATCAGTGCTGCCATGGATGAGTGGCTCTGCCGGCTTCAAACAATGCCAACCAACATAATTCCATCACCCTTTCCGTTGTCTGCACCTCCACGCGTCGTCGTTGGGGACCTCCGAACCAGCCATTCAGTTCAGATCACACCAGCCAATCCTTCTCTACCACCCTTGTCTTCATCCACAGCCTACAATGTCCCCCATGCCCCGCTCCATGTGCAGCCACCTAATTTTGTCCAACCACCACTACTCAAGTAA

Protein sequence

MVLEPNTDQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPRVVVGDLRTSHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLLK

Homology

[Close]

BLAST of IVF0013432 vs. ExPASy TrEMBL
Match: A0A1S4E325 (uncharacterized protein LOC107991791 OS=Cucumis melo OX=3656 GN=LOC107991791 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 75/126 (59.52%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 1   MVLEPNTDQTKDNTTLDGNQTEETVVGTS-----VVAVDARISAAMDEWLCRLQTMPTNI 60
           MV E + DQ  DNTT DGNQ EET    S     V  VDARIS AMDEW C LQT   N+
Sbjct: 1   MVSEHDADQILDNTTFDGNQIEETGNDISETIATVDIVDARISVAMDEWFCHLQTTSANM 60

Query: 61  IPSPFPLSAPPRVV-VGDLRTS---HSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNF 118
           I SPF   A P V      RTS   H +QI PANPSLPPLSSST YNV H PLHV PPN 
Sbjct: 61  IRSPFLSFASPHVAHEPSSRTSEPAHPIQIMPANPSLPPLSSSTTYNVLHVPLHVLPPNS 120

[Close]

BLAST of IVF0013432 vs. ExPASy TrEMBL
Match: A0A5D3DRM9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001270 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 3   LEPNTDQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPL 62
           +   +D T DNTT DGNQTEET  G S  A +A I+AA+DEW   LQT   N+I   F  
Sbjct: 1   MRDKSDHTLDNTTCDGNQTEETAAGIS-AATNAWINAAIDEWFHNLQTTSRNLISQLFSS 60

Query: 63  SAPPRVV---VGDLRT-SHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLL 118
           SAP   +      L T +H +Q+ PA+ ++PPLSSS  Y+VPH P+HV PPN  QPP L
Sbjct: 61  SAPSETIHVPPPKLHTPAHPIQMPPADLAMPPLSSSATYSVPHVPIHVLPPNSDQPPPL 118

[Close]

BLAST of IVF0013432 vs. ExPASy TrEMBL
Match: A0A5D3C1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold432G00040 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.8e-16
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 1   MVLEPNTDQTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIP 60
           MV E + DQT +NTTLDGNQTEE  V  S+V   AV+A+IS AM+EW C LQT P N+I 
Sbjct: 1   MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60

Query: 61  SPFPLSAPPRVVVGDLRTS--------HSVQITPAN-PSLPPLSS--STAYN 99
           SPFP SAPPR  VG+LRTS         S   T +N  +LPP+ S  +T+Y+
Sbjct: 61  SPFPSSAPPRAAVGNLRTSLSSSNHAGQSFSTTLSNLYALPPIGSAANTSYH 112

[Close]

BLAST of IVF0013432 vs. ExPASy TrEMBL
Match: A0A5A7U5T5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001050 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 9   QTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAP 68
           + ++NTT DGNQTEET    S V   AVDAR+SAAMDEW CRLQ  P N  PS    SAP
Sbjct: 12  EIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAP 71

Query: 69  PRVVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 118
           P       ++ H+    +Q  P NP + P SSS  Y  P A + V PPNF  QPPLL
Sbjct: 72  P-------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121

[Close]

BLAST of IVF0013432 vs. ExPASy TrEMBL
Match: A0A5D3C8I9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00870 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 9   QTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAP 68
           + ++NTT DGNQTEET    S V   AVDAR+SAAMDEW CRLQ  P N  PS    SAP
Sbjct: 12  EIQENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAP 71

Query: 69  PRVVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 118
           P       ++ H+    +Q  P NP + P SSS  Y  P A + V PPNF  QPPLL
Sbjct: 72  P-------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121

[Close]

BLAST of IVF0013432 vs. NCBI nr
Match: XP_016902631.1 (PREDICTED: uncharacterized protein LOC107991791 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 3.40e-30
Identity = 75/126 (59.52%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 1   MVLEPNTDQTKDNTTLDGNQTEETVVGTS-----VVAVDARISAAMDEWLCRLQTMPTNI 60
           MV E + DQ  DNTT DGNQ EET    S     V  VDARIS AMDEW C LQT   N+
Sbjct: 1   MVSEHDADQILDNTTFDGNQIEETGNDISETIATVDIVDARISVAMDEWFCHLQTTSANM 60

Query: 61  IPSPFPLSAPPRVV-VGDLRTS---HSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNF 117
           I SPF   A P V      RTS   H +QI PANPSLPPLSSST YNV H PLHV PPN 
Sbjct: 61  IRSPFLSFASPHVAHEPSSRTSEPAHPIQIMPANPSLPPLSSSTTYNVLHVPLHVLPPNS 120

[Close]

BLAST of IVF0013432 vs. NCBI nr
Match: TYK05873.1 (uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.08e-20
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MVLEPNTDQTKDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIP 60
          MV E + DQT +NTTLDGNQTEE  V  S+V   AV+A+IS AM+EW C LQT P N+I 
Sbjct: 1  MVSEHDIDQTLENTTLDGNQTEEIAVRISIVVAAAVNAQISIAMNEWFCCLQTTPANMIL 60

Query: 61 SPFPLSAPPRVVVGDLRTSHS 78
          SPFP SAPPR  VG+LRTS S
Sbjct: 61 SPFPSSAPPRAAVGNLRTSLS 81

[Close]

BLAST of IVF0013432 vs. NCBI nr
Match: TYK26198.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.88e-20
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 8   DQTKDNTTLDGNQTEETVVGTSVVAVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 67
           D T DNTT DGNQTEET  G S  A +A I+AA+DEW   LQT   N+I   F  SAP  
Sbjct: 6   DHTLDNTTCDGNQTEETAAGISA-ATNAWINAAIDEWFHNLQTTSRNLISQLFSSSAPSE 65

Query: 68  VV---VGDLRT-SHSVQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFVQPPLL 117
            +      L T +H +Q+ PA+ ++PPLSSS  Y+VPH P+HV PPN  QPP L
Sbjct: 66  TIHVPPPKLHTPAHPIQMPPADLAMPPLSSSATYSVPHVPIHVLPPNSDQPPPL 118

[Close]

BLAST of IVF0013432 vs. NCBI nr
Match: KAA0050638.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.25e-17
Identity = 59/115 (51.30%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 11  KDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 70
           ++NTT DGNQTEET    S V   AVDAR+SAAMDEW CRLQ  P N  PS    SAPP 
Sbjct: 14  QENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAPP- 73

Query: 71  VVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 117
                 ++ H+    +Q  P NP + P SSS  Y  P A + V PPNF  QPPLL
Sbjct: 74  ------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121

[Close]

BLAST of IVF0013432 vs. NCBI nr
Match: TYK07795.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.55e-17
Identity = 59/115 (51.30%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 11  KDNTTLDGNQTEETVVGTSVV---AVDARISAAMDEWLCRLQTMPTNIIPSPFPLSAPPR 70
           ++NTT DGNQTEET    S V   AVDAR+SAAMDEW CRLQ  P N  PS    SAPP 
Sbjct: 14  QENTTNDGNQTEETTNSFSTVVAIAVDARMSAAMDEWFCRLQKTPENSFPSNLQSSAPP- 73

Query: 71  VVVGDLRTSHS----VQITPANPSLPPLSSSTAYNVPHAPLHVQPPNFV-QPPLL 117
                 ++ H+    +Q  P NP + P SSS  Y  P A + V PPNF  QPPLL
Sbjct: 74  ------KSPHTPVIPLQTAPTNPFVQPFSSSGVYIAPQASICVLPPNFSRQPPLL 121

The following BLAST results are available for this feature:

BLAST of IVF0013432 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013432 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E325	4.6e-24	59.52	uncharacterized protein LOC107991791 OS=Cucumis melo OX=3656 GN=LOC107991791 PE=...	[more]
A0A5D3DRM9	1.4e-17	49.58	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C1P7	7.8e-16	53.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U5T5	6.6e-15	50.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0...	[more]
A0A5D3C8I9	6.6e-15	50.43	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G...	[more]

BLAST of IVF0013432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902631.1	3.40e-30	59.52	PREDICTED: uncharacterized protein LOC107991791 [Cucumis melo]	[more]
TYK05873.1	1.08e-20	64.20	uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa]	[more]
TYK26198.1	1.88e-20	51.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0050638.1	1.25e-17	51.30	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK07795.1	1.55e-17	51.30	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013432 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013432.2	IVF0013432.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups