Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG
mRNA sequence
ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG
Coding sequence (CDS)
ATGGCTTGCCCTTACGTCGATGCTGGTATGGCGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGAACGGTCGGGGACGGCTGTCGCTGTGGCTTCCCGTCGGTGAGGTGCGGATGGAGAAAAACGGGCGGTCGTCGAAGGCGTACGGATGGCGTCTGTGTTCGTCGGGTGAAGAAGCCGAAGAGAAGAAGAAGAAGAAGAGATGGCGGCGGCGCTTCGTGAAGGCGGTGGAGAAGGAAGCCTCGGGGTCGTGCGGCGGCGCAAGGAAGAAAGCGAAAATGGATGGGCTTGCGCGGTAG
Protein sequence
MACPYVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSLWLPVGEVRMEKNGRSSKAYGWRLCSSGEEAEEKKKKKRWRRRFVKAVEKEASGSCGGARKKAKMDGLAR
Homology
BLAST of IVF0013250 vs. ExPASy TrEMBL
Match:
A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 5.1e-09
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 1 MACP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 43
MACP YVDA TADA PPRQ+RPMAGRARGTQKKNGRGRLSL
Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of IVF0013250 vs. ExPASy TrEMBL
Match:
A0A5A7VD11 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE=4 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0
Query: 1 MACPYVDAGMATADAAPPRQRRPMAGRARGTQKK 35
MACPYVDAGMATADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48
BLAST of IVF0013250 vs. ExPASy TrEMBL
Match:
A0A5D3D2P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002650 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 4.9e-04
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0
Query: 5 YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 43
YVDA T D PRQRRPMAGRARGTQKK+GR RL L
Sbjct: 13 YVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50
BLAST of IVF0013250 vs. NCBI nr
Match:
KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 68.2 bits (165), Expect = 8.48e-12
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 1 MACP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
MACP YVDA TADA PPRQ+RPMAGRARGTQKKNGRGRLSL
Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of IVF0013250 vs. NCBI nr
Match:
KAA0066232.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 66.2 bits (160), Expect = 3.70e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0
Query: 1 MACPYVDAGMATADAAPPRQRRPMAGRARGTQKK 34
MACPYVDAGMATADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48
BLAST of IVF0013250 vs. NCBI nr
Match:
TYK17960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 51.6 bits (122), Expect = 5.25e-05
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0
Query: 5 YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
YVDA T D PRQRRPMAGRARGTQKK+GR RL L
Sbjct: 13 YVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50
BLAST of IVF0013250 vs. NCBI nr
Match:
KAA0031930.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 48.9 bits (115), Expect = 4.24e-04
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 0
Query: 3 CP--YVDAGMATADAAPPRQRRPMAGRARGTQKKNGRGRLSL 42
CP YVDA T DAA RQRRPMA RARGTQKK+GR RL L
Sbjct: 144 CPVTYVDARCTTDDAAQLRQRRPMASRARGTQKKDGRRRLPL 185
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VN13 | 5.1e-09 | 84.09 | NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7VD11 | 1.5e-08 | 97.06 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE... | [more] |
| A0A5D3D2P4 | 4.9e-04 | 73.68 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067956.1 | 8.48e-12 | 84.09 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
| KAA0066232.1 | 3.70e-11 | 97.06 | transposase [Cucumis melo var. makuwa] | [more] |
| TYK17960.1 | 5.25e-05 | 73.68 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0031930.1 | 4.24e-04 | 71.43 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
