IVF0013080 (gene) Melon (IVF77) v1

Overview


Name	IVF0013080
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 9817517 .. 9817753 (+)
RNA-Seq Expression	IVF0013080
Synteny	IVF0013080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGCTGCGACGAACGAGCGGTGGAGCTGCGAAGTTGCCGACGACGGAGAAAGAAACAGAAGTGGAGACGGAGACAGAAGTGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAGAAAACGGGTGGCGGCGGCGTGAAGACGAGGATGAAGAAGGCGAAGAGGAAGATGTCGGCGGGGTGGGGGGGGGGGGGGGCGGACGCGCGCGCGGCTAGGGTTATTTAA

mRNA sequence

ATGGATGGGCTGCGACGAACGAGCGGTGGAGCTGCGAAGTTGCCGACGACGGAGAAAGAAACAGAAGTGGAGACGGAGACAGAAGTGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAGAAAACGGGTGGCGGCGGCGTGAAGACGAGGATGAAGAAGGCGAAGAGGAAGATGTCGGCGGGGTGGGGGGGGGGGGGGGCGGACGCGCGCGCGGCTAGGGTTATTTAA

Coding sequence (CDS)

ATGGATGGGCTGCGACGAACGAGCGGTGGAGCTGCGAAGTTGCCGACGACGGAGAAAGAAACAGAAGTGGAGACGGAGACAGAAGTGGAGACGGAGACAGAAGTGGAGACGCGAACGGAGGGGAAAAAGAAAACGGGTGGCGGCGGCGTGAAGACGAGGATGAAGAAGGCGAAGAGGAAGATGTCGGCGGGGTGGGGGGGGGGGGGGGCGGACGCGCGCGCGGCTAGGGTTATTTAA

Protein sequence

MDGLRRTSGGAAKLPTTEKETEVETETEVETETEVETRTEGKKKTGGGGVKTRMKKAKRKMSAGWGGGGADARAARVI

Homology

[Close]

BLAST of IVF0013080 vs. NCBI nr
Match: MBB5208986.1 (hypothetical protein [Chiayiivirga flava])

HSP 1 Score: 48.1 bits (113), Expect = 8.16e-05
Identity = 35/73 (47.95%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 1   MDGLRRTSGGAAKLPTTEKETEVETETEVETETEVETRTEGKKKTGGG-----GVKTRMK 60
           + G RR    A   P TE ETE ETETE ETETE ET TE + +TG G     G +T   
Sbjct: 32  LTGWRRLDAAAFAEPETETETETETETETETETETETETETETETGPGPGPGPGPETGPC 91

Query: 61  KAKRKMSAGWGGG 68
              R+   GWGGG
Sbjct: 92  SLSREAGEGWGGG 104

The following BLAST results are available for this feature:

BLAST of IVF0013080 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013080 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013080 vs. NCBI nr


Match Name	E-value	Identity	Description
MBB5208986.1	8.16e-05	47.95	hypothetical protein [Chiayiivirga flava]	[more]

BLAST of IVF0013080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013080.2	IVF0013080.2	mRNA