Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAAGTGCCTAATTTCTGATTCCAATAGGAATGAGCTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG
mRNA sequence
ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAACTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG
Coding sequence (CDS)
ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAACTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG
Protein sequence
MTSDKELFKTLACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLLSVGQLVEKGFKLLFEKKKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTEL
Homology
BLAST of IVF0012345 vs. ExPASy TrEMBL
Match:
A0A5D3BE46 (Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00220 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + SR+KIGN+ YLEVKGKG VS +SCAGTKLIT+VLF+PEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
+VGQLVEK FK+LFE+ K LFKINMQ+K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTK 269
BLAST of IVF0012345 vs. ExPASy TrEMBL
Match:
A0A6J1DWT9 (uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025149 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 5.6e-29
Identity = 79/120 (65.83%), Postives = 89/120 (74.17%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
M SDKELFK L + SR+KIGN YLEVKGK SIESC GTKLITEVLFVP I QNLL
Sbjct: 273 MXSDKELFKDLDRSFKSRVKIGNGEYLEVKGKXTXSIESCVGTKLITEVLFVPXIAQNLL 332
Query: 61 SVGQLVEKGFKLLFEKKKL----------FKINMQQKTFSLDPLEKEKVVFKYQLYDTEL 109
SVGQLVEKGFK+LFE +K FKI MQ K+FSLDP+EK+++V K Q+ DTEL
Sbjct: 333 SVGQLVEKGFKVLFEYEKCLISDSNGNEWFKIKMQHKSFSLDPVEKDQIVSKCQVNDTEL 392
BLAST of IVF0012345 vs. ExPASy TrEMBL
Match:
A0A5A7TNI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00270 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 7.3e-29
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + S++KIGN YLEVKGKG VS +SCAGTKLIT+VLF+ EIDQNLL
Sbjct: 1 MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
+VGQLVEK FK+LFE+ K LFKINMQ K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 61 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTK 119
BLAST of IVF0012345 vs. ExPASy TrEMBL
Match:
A0A6P4PSP3 (uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481577 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MT D++LFK L + S+++IGN YLEVKG+G V+IESC GTKLI++VLFVPEIDQNLL
Sbjct: 228 MTYDEKLFKDLDRSLKSKVRIGNGEYLEVKGRGTVAIESCTGTKLISDVLFVPEIDQNLL 287
Query: 61 SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQ 103
SVGQLVEK FK++FE+ +LF I MQ+K+FSL+P EKE+V K Q
Sbjct: 288 SVGQLVEKRFKVMFEEGMCLILDSSGNELFWIKMQKKSFSLNPFEKEQVASKCQ 341
BLAST of IVF0012345 vs. ExPASy TrEMBL
Match:
A0A5B6WLL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium australe OX=47621 GN=EPI10_022275 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MT K+LFK L + S ++IGN YLEV+GKG V IESC GTK I++VLFV EIDQNLL
Sbjct: 1 MTCGKKLFKDLDRSLKSSVRIGNREYLEVQGKGTVVIESCTGTKFISDVLFVLEIDQNLL 60
Query: 61 SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
SVGQLVE GFK++FE+ LF+I MQ K+FSL+PLE+E+V FK Q+ D+E
Sbjct: 61 SVGQLVENGFKVMFEEGMCLILYFCSNVLFRIKMQNKSFSLNPLEEEQVAFKCQVSDSE 119
BLAST of IVF0012345 vs. NCBI nr
Match:
XP_038885771.1 (uncharacterized protein LOC120076063 [Benincasa hispida])
HSP 1 Score: 145 bits (367), Expect = 6.65e-42
Identity = 84/120 (70.00%), Postives = 91/120 (75.83%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + SR+KIGN+ YLEVKGK VSIESC TKLITEVLFVPEIDQNLL
Sbjct: 58 MTSDKELFKDLDKSFKSRVKIGNSEYLEVKGKDTVSIESCVETKLITEVLFVPEIDQNLL 117
Query: 61 SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTEL 108
SVGQLVEKGFK+LFEK KLFKI MQ F LDPLEKE++ FK Q+ DTEL
Sbjct: 118 SVGQLVEKGFKVLFEKGKCLISDSNGNKLFKIKMQHTRFLLDPLEKEQIAFKCQVNDTEL 177
BLAST of IVF0012345 vs. NCBI nr
Match:
XP_038902496.1 (uncharacterized protein LOC120089156 [Benincasa hispida])
HSP 1 Score: 144 bits (362), Expect = 3.06e-40
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + SR+KIGN+ YLEVKGKG VSIESCAGTKLITEVLFVPEIDQNLL
Sbjct: 106 MTSDKELFKDLDKSFKSRVKIGNDEYLEVKGKGTVSIESCAGTKLITEVLFVPEIDQNLL 165
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQL 103
S+GQLVEKGFK+LFE++K LFKI MQ K+FSLDPLE E++ FK Q+
Sbjct: 166 SIGQLVEKGFKVLFEERKCLISDSNGNELFKIKMQYKSFSLDPLE-EQIAFKCQV 219
BLAST of IVF0012345 vs. NCBI nr
Match:
XP_038890984.1 (uncharacterized protein LOC120080400 [Benincasa hispida])
HSP 1 Score: 144 bits (364), Expect = 7.56e-40
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + SR+KIGN YLEVKGKGIVSIESCAGTKLIT+VLFVPEIDQNLL
Sbjct: 1 MTSDKELFKDLDKSFKSRMKIGNCEYLEVKGKGIVSIESCAGTKLITKVLFVPEIDQNLL 60
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQL 103
SVGQLVEKGFK+LFE+ K L KI MQ K+FSLDPLEK+++ FK Q+
Sbjct: 61 SVGQLVEKGFKVLFEEGKCLIFYSNGNELLKIKMQHKSFSLDPLEKKQITFKCQV 115
BLAST of IVF0012345 vs. NCBI nr
Match:
TYJ98110.1 (putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa])
HSP 1 Score: 140 bits (353), Expect = 1.52e-38
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + SR+KIGN+ YLEVKGKG VS +SCAGTKLIT+VLF+PEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 107
+VGQLVEK FK+LFE+ K LFKINMQ+K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTK 269
BLAST of IVF0012345 vs. NCBI nr
Match:
KAA0043367.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (340), Expect = 2.17e-38
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 0
Query: 1 MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
MTSDKELFK L + S++KIGN YLEVKGKG VS +SCAGTKLIT+VLF+ EIDQNLL
Sbjct: 1 MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60
Query: 61 SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 107
+VGQLVEK FK+LFE+ K LFKINMQ K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 61 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTK 119
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BE46 | 2.3e-30 | 66.39 | Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=... | [more] |
A0A6J1DWT9 | 5.6e-29 | 65.83 | uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5A7TNI4 | 7.3e-29 | 64.71 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A6P4PSP3 | 1.4e-24 | 59.65 | uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481... | [more] |
A0A5B6WLL2 | 1.4e-24 | 57.98 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium austral... | [more] |
Match Name | E-value | Identity | Description | |
XP_038885771.1 | 6.65e-42 | 70.00 | uncharacterized protein LOC120076063 [Benincasa hispida] | [more] |
XP_038902496.1 | 3.06e-40 | 71.30 | uncharacterized protein LOC120089156 [Benincasa hispida] | [more] |
XP_038890984.1 | 7.56e-40 | 71.30 | uncharacterized protein LOC120080400 [Benincasa hispida] | [more] |
TYJ98110.1 | 1.52e-38 | 66.39 | putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa] | [more] |
KAA0043367.1 | 2.17e-38 | 64.71 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |