IVF0012345 (gene) Melon (IVF77) v1

Overview


Name	IVF0012345
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr05: 9466879 .. 9467236 (+)
RNA-Seq Expression	IVF0012345
Synteny	IVF0012345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAAGTGCCTAATTTCTGATTCCAATAGGAATGAGCTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG

mRNA sequence

ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAACTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG

Coding sequence (CDS)

ATGACAAGTGACAAAGAGTTGTTCAAGACCTTGGCATGTCATTCAAGGTTGAAAATAGGAAACAATGTGTATTTAGAAGTAAAGGGGAAGGGCATAGTGTCAATAGAGAGTTGTGCTGGAACCAAGTTGATTACTGAAGTGTTATTTGTCCCTGAGATTGATCAAAACTTGTTAAGTGTTGGTCAACTAGTAGAGAAGGGATTCAAATTGTTGTTTGAAAAAAAGAAACTCTTTAAAATAAATATGCAACAGAAGACCTTTTCGTTGGATCCACTTGAAAAAGAGAAGGTAGTTTTCAAGTATCAATTGTATGACACTGAGTTATAG

Protein sequence

MTSDKELFKTLACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLLSVGQLVEKGFKLLFEKKKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTEL

Homology

[Close]

BLAST of IVF0012345 vs. ExPASy TrEMBL
Match: A0A5D3BE46 (Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00220 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  SR+KIGN+ YLEVKGKG VS +SCAGTKLIT+VLF+PEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
           +VGQLVEK FK+LFE+ K          LFKINMQ+K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTK 269

[Close]

BLAST of IVF0012345 vs. ExPASy TrEMBL
Match: A0A6J1DWT9 (uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025149 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.6e-29
Identity = 79/120 (65.83%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           M SDKELFK L  +  SR+KIGN  YLEVKGK   SIESC GTKLITEVLFVP I QNLL
Sbjct: 273 MXSDKELFKDLDRSFKSRVKIGNGEYLEVKGKXTXSIESCVGTKLITEVLFVPXIAQNLL 332

Query: 61  SVGQLVEKGFKLLFEKKKL----------FKINMQQKTFSLDPLEKEKVVFKYQLYDTEL 109
           SVGQLVEKGFK+LFE +K           FKI MQ K+FSLDP+EK+++V K Q+ DTEL
Sbjct: 333 SVGQLVEKGFKVLFEYEKCLISDSNGNEWFKIKMQHKSFSLDPVEKDQIVSKCQVNDTEL 392

[Close]

BLAST of IVF0012345 vs. ExPASy TrEMBL
Match: A0A5A7TNI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00270 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.3e-29
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  S++KIGN  YLEVKGKG VS +SCAGTKLIT+VLF+ EIDQNLL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
           +VGQLVEK FK+LFE+ K          LFKINMQ K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTK 119

[Close]

BLAST of IVF0012345 vs. ExPASy TrEMBL
Match: A0A6P4PSP3 (uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481577 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MT D++LFK L  +  S+++IGN  YLEVKG+G V+IESC GTKLI++VLFVPEIDQNLL
Sbjct: 228 MTYDEKLFKDLDRSLKSKVRIGNGEYLEVKGRGTVAIESCTGTKLISDVLFVPEIDQNLL 287

Query: 61  SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQ 103
           SVGQLVEK FK++FE+           +LF I MQ+K+FSL+P EKE+V  K Q
Sbjct: 288 SVGQLVEKRFKVMFEEGMCLILDSSGNELFWIKMQKKSFSLNPFEKEQVASKCQ 341

[Close]

BLAST of IVF0012345 vs. ExPASy TrEMBL
Match: A0A5B6WLL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium australe OX=47621 GN=EPI10_022275 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MT  K+LFK L  +  S ++IGN  YLEV+GKG V IESC GTK I++VLFV EIDQNLL
Sbjct: 1   MTCGKKLFKDLDRSLKSSVRIGNREYLEVQGKGTVVIESCTGTKFISDVLFVLEIDQNLL 60

Query: 61  SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 108
           SVGQLVE GFK++FE+            LF+I MQ K+FSL+PLE+E+V FK Q+ D+E
Sbjct: 61  SVGQLVENGFKVMFEEGMCLILYFCSNVLFRIKMQNKSFSLNPLEEEQVAFKCQVSDSE 119

[Close]

BLAST of IVF0012345 vs. NCBI nr
Match: XP_038885771.1 (uncharacterized protein LOC120076063 [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 6.65e-42
Identity = 84/120 (70.00%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  SR+KIGN+ YLEVKGK  VSIESC  TKLITEVLFVPEIDQNLL
Sbjct: 58  MTSDKELFKDLDKSFKSRVKIGNSEYLEVKGKDTVSIESCVETKLITEVLFVPEIDQNLL 117

Query: 61  SVGQLVEKGFKLLFEK----------KKLFKINMQQKTFSLDPLEKEKVVFKYQLYDTEL 108
           SVGQLVEKGFK+LFEK           KLFKI MQ   F LDPLEKE++ FK Q+ DTEL
Sbjct: 118 SVGQLVEKGFKVLFEKGKCLISDSNGNKLFKIKMQHTRFLLDPLEKEQIAFKCQVNDTEL 177

[Close]

BLAST of IVF0012345 vs. NCBI nr
Match: XP_038902496.1 (uncharacterized protein LOC120089156 [Benincasa hispida])

HSP 1 Score: 144 bits (362), Expect = 3.06e-40
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  SR+KIGN+ YLEVKGKG VSIESCAGTKLITEVLFVPEIDQNLL
Sbjct: 106 MTSDKELFKDLDKSFKSRVKIGNDEYLEVKGKGTVSIESCAGTKLITEVLFVPEIDQNLL 165

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQL 103
           S+GQLVEKGFK+LFE++K          LFKI MQ K+FSLDPLE E++ FK Q+
Sbjct: 166 SIGQLVEKGFKVLFEERKCLISDSNGNELFKIKMQYKSFSLDPLE-EQIAFKCQV 219

[Close]

BLAST of IVF0012345 vs. NCBI nr
Match: XP_038890984.1 (uncharacterized protein LOC120080400 [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 7.56e-40
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  SR+KIGN  YLEVKGKGIVSIESCAGTKLIT+VLFVPEIDQNLL
Sbjct: 1   MTSDKELFKDLDKSFKSRMKIGNCEYLEVKGKGIVSIESCAGTKLITKVLFVPEIDQNLL 60

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQL 103
           SVGQLVEKGFK+LFE+ K          L KI MQ K+FSLDPLEK+++ FK Q+
Sbjct: 61  SVGQLVEKGFKVLFEEGKCLIFYSNGNELLKIKMQHKSFSLDPLEKKQITFKCQV 115

[Close]

BLAST of IVF0012345 vs. NCBI nr
Match: TYJ98110.1 (putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 1.52e-38
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  SR+KIGN+ YLEVKGKG VS +SCAGTKLIT+VLF+PEIDQNLL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 107
           +VGQLVEK FK+LFE+ K          LFKINMQ+K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTK 269

[Close]

BLAST of IVF0012345 vs. NCBI nr
Match: KAA0043367.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 2.17e-38
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 1   MTSDKELFKTL--ACHSRLKIGNNVYLEVKGKGIVSIESCAGTKLITEVLFVPEIDQNLL 60
           MTSDKELFK L  +  S++KIGN  YLEVKGKG VS +SCAGTKLIT+VLF+ EIDQNLL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  SVGQLVEKGFKLLFEKKK----------LFKINMQQKTFSLDPLEKEKVVFKYQLYDTE 107
           +VGQLVEK FK+LFE+ K          LFKINMQ K+FSL+ LE+E+V FK Q+ DT+
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTK 119

The following BLAST results are available for this feature:

BLAST of IVF0012345 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE46	2.3e-30	66.39	Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1DWT9	5.6e-29	65.83	uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7TNI4	7.3e-29	64.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6P4PSP3	1.4e-24	59.65	uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481...	[more]
A0A5B6WLL2	1.4e-24	57.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium austral...	[more]

BLAST of IVF0012345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885771.1	6.65e-42	70.00	uncharacterized protein LOC120076063 [Benincasa hispida]	[more]
XP_038902496.1	3.06e-40	71.30	uncharacterized protein LOC120089156 [Benincasa hispida]	[more]
XP_038890984.1	7.56e-40	71.30	uncharacterized protein LOC120080400 [Benincasa hispida]	[more]
TYJ98110.1	1.52e-38	66.39	putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa]	[more]
KAA0043367.1	2.17e-38	64.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0012345 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 1..91
None	No IPR available	PANTHER	PTHR34222:SF31	SUBFAMILY NOT NAMED	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012345.1	IVF0012345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016779	nucleotidyltransferase activity