Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG
mRNA sequence
ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG
Coding sequence (CDS)
ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG
Protein sequence
MADVCIALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYVGIFFLDVFFIFADVFWHREYLVSCSASYL
Homology
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match:
A0A5D3DDA9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00450 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYV 69
+R PDA RC I C+ F + T ASGEAFPT +GVGKAS DVL D ++YV
Sbjct: 490 ERVFPDAGRCAGIACIENASFSTQAMPTLTQASGEAFPTPRWYGVGKASLDVLPDAILYV 549
Query: 70 GIFFLDVFFIFADVFWHREY 90
G + DV FIFADVFW REY
Sbjct: 550 GKGYPDVLFIFADVFWRREY 569
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match:
A0A5A7T2X5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001030 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 7 ALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDV 62
+L GIPDAARC+DIRC+ KEVF PLST ILAS EAFPT YQH VGK S DV
Sbjct: 131 SLRIEGIPDAARCVDIRCIRKEVFLTAPLSTRILASEEAFPTPYQHSVGKTSSDV 185
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match:
A0A5D3DH90 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00380 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD 61
KRG PD C+ I C+G EVFP P+ST ILA EAFPTSYQHGVGKASPD
Sbjct: 103 KRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPD 153
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match:
A0A5A7U9S0 (Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003740 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 42/79 (53.16%), Postives = 44/79 (55.70%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
KRG DA RC DI C GKEVFP + T ASGEAF GK P VL D
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFPTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216
Query: 70 VMYVGIFFLDVFFIFADVF 85
V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match:
A0A5D3CLR9 (Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00500 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 41/79 (51.90%), Postives = 43/79 (54.43%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
KRG DA RC DI C GKEVF + T ASGEAF GK P VL D
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFSTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216
Query: 70 VMYVGIFFLDVFFIFADVF 85
V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235
BLAST of IVF0012299 vs. NCBI nr
Match:
TYK21553.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 85.5 bits (210), Expect = 7.23e-17
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYV 69
+R PDA RC I C+ F + T ASGEAFPT +GVGKAS DVL D ++YV
Sbjct: 490 ERVFPDAGRCAGIACIENASFSTQAMPTLTQASGEAFPTPRWYGVGKASLDVLPDAILYV 549
Query: 70 GIFFLDVFFIFADVFWHREY 89
G + DV FIFADVFW REY
Sbjct: 550 GKGYPDVLFIFADVFWRREY 569
BLAST of IVF0012299 vs. NCBI nr
Match:
KAA0035927.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 82.0 bits (201), Expect = 7.56e-17
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0
Query: 7 ALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDV 61
+L GIPDAARC+DIRC+ KEVF PLST ILAS EAFPT YQH VGK S DV
Sbjct: 131 SLRIEGIPDAARCVDIRCIRKEVFLTAPLSTRILASEEAFPTPYQHSVGKTSSDV 185
BLAST of IVF0012299 vs. NCBI nr
Match:
KAA0049798.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 80.9 bits (198), Expect = 2.25e-16
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD 60
KRG PD C+ I C+G EVFP P+ST ILA EAFPTSYQHGVGKASPD
Sbjct: 103 KRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPD 153
BLAST of IVF0012299 vs. NCBI nr
Match:
KAA0051920.1 (tetraspanin-3-like [Cucumis melo var. makuwa])
HSP 1 Score: 67.0 bits (162), Expect = 8.14e-11
Identity = 42/79 (53.16%), Postives = 44/79 (55.70%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
KRG DA RC DI C GKEVFP + T ASGEAF GK P VL D
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFPTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216
Query: 70 VMYVGIFFLDVFFIFADVF 84
V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235
BLAST of IVF0012299 vs. NCBI nr
Match:
TYK12242.1 (tetraspanin-3-like [Cucumis melo var. makuwa])
HSP 1 Score: 63.9 bits (154), Expect = 1.16e-09
Identity = 41/79 (51.90%), Postives = 43/79 (54.43%), Query Frame = 0
Query: 10 KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
KRG DA RC DI C GKEVF + T ASGEAF GK P VL D
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFSTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216
Query: 70 VMYVGIFFLDVFFIFADVF 84
V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DDA9 | 1.3e-13 | 55.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7T2X5 | 1.9e-12 | 70.91 | NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3DH90 | 4.3e-12 | 70.59 | Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7U9S0 | 5.0e-08 | 53.16 | Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00... | [more] |
A0A5D3CLR9 | 4.2e-07 | 51.90 | Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G0... | [more] |
Match Name | E-value | Identity | Description | |
TYK21553.1 | 7.23e-17 | 55.00 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
KAA0035927.1 | 7.56e-17 | 70.91 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
KAA0049798.1 | 2.25e-16 | 70.59 | zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zin... | [more] |
KAA0051920.1 | 8.14e-11 | 53.16 | tetraspanin-3-like [Cucumis melo var. makuwa] | [more] |
TYK12242.1 | 1.16e-09 | 51.90 | tetraspanin-3-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |