IVF0012299 (gene) Melon (IVF77) v1

Overview
NameIVF0012299
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr05: 5009506 .. 5009802 (-)
RNA-Seq ExpressionIVF0012299
SyntenyIVF0012299
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG

mRNA sequence

ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG

Coding sequence (CDS)

ATGGCTGACGTATGCATTGCGTTGGAAAAAAGAGGCATTCCCGACGCCGCAAGGTGCATCGACATAAGGTGCGTCGGGAAAGAGGTATTCCCAATGCCACCTTTGTCGACGTGTATATTGGCGTCGGGAGAAGCTTTCCCGACGTCGTACCAACACGGCGTTGGGAAAGCCTCTCCCGACGTTCTTTTTGACGTCGTGATGTACGTCGGGATATTCTTTCTCGACGTATTTTTCATTTTCGCCGATGTTTTTTGGCATCGGGAGTACCTCGTCTCTTGTAGTGCTTCTTATCTATAG

Protein sequence

MADVCIALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYVGIFFLDVFFIFADVFWHREYLVSCSASYL
Homology
BLAST of IVF0012299 vs. ExPASy TrEMBL
Match: A0A5D3DDA9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYV 69
           +R  PDA RC  I C+    F    + T   ASGEAFPT   +GVGKAS DVL D ++YV
Sbjct: 490 ERVFPDAGRCAGIACIENASFSTQAMPTLTQASGEAFPTPRWYGVGKASLDVLPDAILYV 549

Query: 70  GIFFLDVFFIFADVFWHREY 90
           G  + DV FIFADVFW REY
Sbjct: 550 GKGYPDVLFIFADVFWRREY 569

BLAST of IVF0012299 vs. ExPASy TrEMBL
Match: A0A5A7T2X5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001030 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 7   ALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDV 62
           +L   GIPDAARC+DIRC+ KEVF   PLST ILAS EAFPT YQH VGK S DV
Sbjct: 131 SLRIEGIPDAARCVDIRCIRKEVFLTAPLSTRILASEEAFPTPYQHSVGKTSSDV 185

BLAST of IVF0012299 vs. ExPASy TrEMBL
Match: A0A5D3DH90 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00380 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD 61
           KRG PD   C+ I C+G EVFP  P+ST ILA  EAFPTSYQHGVGKASPD
Sbjct: 103 KRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPD 153

BLAST of IVF0012299 vs. ExPASy TrEMBL
Match: A0A5A7U9S0 (Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003740 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 42/79 (53.16%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
           KRG  DA RC DI C GKEVFP   + T   ASGEAF        GK  P     VL D 
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFPTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216

Query: 70  VMYVGIFFLDVFFIFADVF 85
           V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235

BLAST of IVF0012299 vs. ExPASy TrEMBL
Match: A0A5D3CLR9 (Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 41/79 (51.90%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
           KRG  DA RC DI C GKEVF    + T   ASGEAF        GK  P     VL D 
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFSTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216

Query: 70  VMYVGIFFLDVFFIFADVF 85
           V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235

BLAST of IVF0012299 vs. NCBI nr
Match: TYK21553.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 7.23e-17
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDVLFDVVMYV 69
           +R  PDA RC  I C+    F    + T   ASGEAFPT   +GVGKAS DVL D ++YV
Sbjct: 490 ERVFPDAGRCAGIACIENASFSTQAMPTLTQASGEAFPTPRWYGVGKASLDVLPDAILYV 549

Query: 70  GIFFLDVFFIFADVFWHREY 89
           G  + DV FIFADVFW REY
Sbjct: 550 GKGYPDVLFIFADVFWRREY 569

BLAST of IVF0012299 vs. NCBI nr
Match: KAA0035927.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 7.56e-17
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 7   ALEKRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPDV 61
           +L   GIPDAARC+DIRC+ KEVF   PLST ILAS EAFPT YQH VGK S DV
Sbjct: 131 SLRIEGIPDAARCVDIRCIRKEVFLTAPLSTRILASEEAFPTPYQHSVGKTSSDV 185

BLAST of IVF0012299 vs. NCBI nr
Match: KAA0049798.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 2.25e-16
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD 60
           KRG PD   C+ I C+G EVFP  P+ST ILA  EAFPTSYQHGVGKASPD
Sbjct: 103 KRGFPDVEICVGIGCIGNEVFPTQPMSTHILALREAFPTSYQHGVGKASPD 153

BLAST of IVF0012299 vs. NCBI nr
Match: KAA0051920.1 (tetraspanin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.14e-11
Identity = 42/79 (53.16%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
           KRG  DA RC DI C GKEVFP   + T   ASGEAF        GK  P     VL D 
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFPTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216

Query: 70  VMYVGIFFLDVFFIFADVF 84
           V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235

BLAST of IVF0012299 vs. NCBI nr
Match: TYK12242.1 (tetraspanin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.16e-09
Identity = 41/79 (51.90%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 10  KRGIPDAARCIDIRCVGKEVFPMPPLSTCILASGEAFPTSYQHGVGKASPD----VLFDV 69
           KRG  DA RC DI C GKEVF    + T   ASGEAF        GK  P     VL D 
Sbjct: 157 KRGFSDAGRCADIVCFGKEVFSTQAMPTRSSASGEAFQRCTNTASGKPLPTPFSRVLPDA 216

Query: 70  VMYVGIFFLDVFFIFADVF 84
           V+ VGI F DV F FADVF
Sbjct: 217 VLDVGITFPDVLFNFADVF 235

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DDA91.3e-1355.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T2X51.9e-1270.91NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DH904.3e-1270.59Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7U9S05.0e-0853.16Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00... [more]
A0A5D3CLR94.2e-0751.90Tetraspanin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G0... [more]
Match NameE-valueIdentityDescription
TYK21553.17.23e-1755.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0035927.17.56e-1770.91NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0049798.12.25e-1670.59zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYK23067.1 zin... [more]
KAA0051920.18.14e-1153.16tetraspanin-3-like [Cucumis melo var. makuwa][more]
TYK12242.11.16e-0951.90tetraspanin-3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012299.1IVF0012299.1mRNA