IVF0012044 (gene) Melon (IVF77) v1

Overview


Name	IVF0012044
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr06: 12112087 .. 12112299 (+)
RNA-Seq Expression	IVF0012044
Synteny	IVF0012044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGGTCCCAAGGTTTGAGAGTGGACCGGCTTTCTCTCCCCTTCGTGGGACGAAAGGGCGAGGGAGAAAGAGACGATCAAAAACTGGGAAGCGGGAATCGCAGAATTTGGCACACGAAAATGCAGCGCCAAACTTCCCCACTTGCCAACCACAGATCAGTGTCCGTACATCCATCGGGGGCGCTGCACCCGCCCCTCTACTACAAATGA

mRNA sequence

ATGGTGGGGTCCCAAGGTTTGAGAGTGGACCGGCTTTCTCTCCCCTTCGTGGGACGAAAGGGCGAGGGAGAAAGAGACGATCAAAAACTGGGAAGCGGGAATCGCAGAATTTGGCACACGAAAATGCAGCGCCAAACTTCCCCACTTGCCAACCACAGATCAGTGTCCGTACATCCATCGGGGGCGCTGCACCCGCCCCTCTACTACAAATGA

Coding sequence (CDS)

ATGGTGGGGTCCCAAGGTTTGAGAGTGGACCGGCTTTCTCTCCCCTTCGTGGGACGAAAGGGCGAGGGAGAAAGAGACGATCAAAAACTGGGAAGCGGGAATCGCAGAATTTGGCACACGAAAATGCAGCGCCAAACTTCCCCACTTGCCAACCACAGATCAGTGTCCGTACATCCATCGGGGGCGCTGCACCCGCCCCTCTACTACAAATGA

Protein sequence

MVGSQGLRVDRLSLPFVGRKGEGERDDQKLGSGNRRIWHTKMQRQTSPLANHRSVSVHPSGALHPPLYYK

Homology

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BLAST of IVF0012044 vs. ExPASy TrEMBL
Match: A0A0A0L8H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G599480 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MVGSQGLRVDRLSLPFVGRKGEGERDDQKLGSGNRRIWHTKMQRQTSPLANHRSVSVH 59
          MVGSQGL VDRL LPFVGRKGEGE DDQKLGSGNRRIWH KM+RQTSPLANHRSVS++
Sbjct: 1  MVGSQGLSVDRLCLPFVGRKGEGEGDDQKLGSGNRRIWHIKMKRQTSPLANHRSVSIY 58

The following BLAST results are available for this feature:

BLAST of IVF0012044 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8H9	2.4e-20	87.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G599480 PE=4 SV=1	[more]

BLAST of IVF0012044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of IVF0012044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012044.1	IVF0012044.1	mRNA