Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGA GCGAAATATCTATGGATTTCATTGAAGGTCTACCTAAATTTAATGGATTTAAAGTCATCTTTGTAGTAGTGGATCGATTCAGCAAGTATAGGCACTTCTTGACATTGAAACACCCTTATACTGCAAAGACCGTGGCTAACTTATTCATTAAAGAAATCGTAAGGTTTCATGGATATCCCAAATCTATAGTCTCAAATAGGGATAAGGTCTTTCTAAGTAATTTTTGGAAAGAGCTCTTCAAGATGGCAAGACAAAATTAAATCGAAGCACAACATACCATCCACAATCCAAGGGGCAAATTGAAGTAGTTAATAGAGGAACTGAGACATACCTACGTTGCTTTTGTGGAGAAAGACCAAAAGAGTGGGCTAGATGGCTACATTGGGCAGAATACAGGTGTAACACTATATTCCAGAAATCCTTAGGAATAACACCGTTCCAAGCAGTGTGTAGTCGATTGCCACCCCCCAGATATATTATGGAGATCAAGACGCCCCAAACTCTACAGAGCAGCAAAAAGAGAGAGATATAGCCCTAGGGGCATTGAAAGAGCACCTGAGAATCGCTCAAGAGAAGATGAATAGAAGTGCATATCAAAAGAGAAGAGAAGTAGAATACATGGTGGGAGATATGGTCTTTTTTAAGATAAGACCCTATAGGCAAGTCTCACTGCAAAGAAGAAGAAGAAATGAAAAGTTGTCTCCTAAATTTTTTGGGCCCTATAAAATCTTAGAGAGAATTGGTCCAGTGGCTTATAAGTTGGAACTACCGGAGAAAACATCCATTCACCCTGTATTCCATGTTTCACATGGGAAGACTATGATGAGATCCAACAATGATTTCCCGAGTTTCACCTTGAGAACAAGGTGAATTTGAAGAAGGGGTGTAACGATAGACCCCTATCATCCAGCAATACAGCAAAAGAGGAAAGAAAACCAACAAATAGATAAATTTGTTAATAAAATCTATTAGAAAAGTTAGTTAGGCAAAAAGCTTAAATAGCACCTTAGTCTAAAGGAATAGGCAGTGAAGTTTTATGAAGAAGAGTTCCTTCATTCTTGAGAGAGAGAATAACAAAGAGAGAGAGATTACTTTCTGTATTAGAGTTTCACTATCCATTAACAATCTTACTTGATTGATTACAAGAACGGGTCCCATCACACTTCCCTTATTAACTTGTATCAATCCCTACATACTTTAATTTAAGCGAAAATTACACTTTTGAACCCTTAACTTAAAACTTAAATTCAAGACCATAAGCACCCAAATTAAGTCAATCTTAGTGGGTCTTTAAATTCCATAAGCTCTTATCTCAACTATCAAATATTTTTGGGATTTAGATCCATTATATTAACATGAATCAACAACCTTAAGCACTTTCTAAGATCATCTAAACCACTTCATATTTTGAACTTTATAAAAGTGACTCTCAAACGAACTCTAAAGTTAATGGAACGCCCCTTTTTTACCTCTAACATTCAACTTTAGGACCCGAATATTACGGGTAGTTTAATTTTAATGCTTAGACTTAATGGCCATTTAAGAACTCGAAGAAAACTCACTTAAATTACTCCAACACTTACCAAACACTTAGCAAAGTACCCTAAAGTTCGATGGAAAACCCTCTATCCACCTTCAACTATCGAATCCTAACCTCCAAAAACCGTCGGTTGTTTAATAATAGGACCGAAACTCAATGGGCACTCAAAACCCACTCAATAAATCTTAGAATCTTACCCAAATTGTGTGAAAAGATCCAATTCCAAGCTTCCTAAAGGCTGAACAGCGGCTAAAATCTCCGAGAACTCCAAATCTAACAATAAAATGTAATGGGTATTGCAAAATCAAAGCGGAAACTAAATGGGTATTCAAAAATCTTCGACAAATTCATTTAAAATACACTAAAATAAGCAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG mRNA sequence
ATGGACAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG Coding sequence (CDS)
ATGGACAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG Protein sequence
MDKSLSKLEDPTTSGNESRERYDDEKVQLKCSARLRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRVVGVGELRGCWRASPRKVGAYQRAREMEGGGAARVR
Homology
BLAST of IVF0012004 vs. ExPASy TrEMBL
Match:
A0A5A7V3X8 (DNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003050 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0
Query: 35 LRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 72 L AR+SPR TTGWS GEDGSGN N+ +DRRRRV Sbjct: 479 LHPVLARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 515
BLAST of IVF0012004 vs. NCBI nr
Match:
KAA0062000.1 (Integrase, catalytic core [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 6.69e-06
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0
Query: 35 LRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 71 L AR+SPR TTGWS GEDGSGN N+ +DRRRRV Sbjct: 479 LHPVLARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 515
BLAST of IVF0012004 vs. NCBI nr
Match:
TYK05024.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])
HSP 1 Score: 53.9 bits (128), Expect = 1.23e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0
Query: 40 ARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 71 AR+SPR TTGWS GEDGSGN N+ +DRRRRV Sbjct: 364 ARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 395
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7V3X8 8.0e-04 67.57 DNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
Match Name E-value Identity Description
KAA0062000.1 6.69e-06 67.57 Integrase, catalytic core [Cucumis melo var. makuwa] [more]
TYK05024.1 1.23e-05 75.00 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
A T G G A C A A A T C C T T A T C C A A A C T C G A A G A T C C A A C T A C C A G T G G G A A T G A G A G T C G T G A A C G G T A T G A T G A T G A A A A G G T G C A A C T C A A G T G T A G C G C A C G C T T G C G G A C T G C A A C G G C G C G A C G A A G C C C G C G T T C A A C A A C T G G C T G G A G C A G C G G T G A A G A C G G G T C G G G C A A C G T A A A C G T T T G C G G G A T G G A T C G C C G G A G G A G G G T C G T C G G C G T C G G T G A G T T G C G T G G C T G C T G G C G T G C T T C G C C G A G G A A G G T A G G A G C T T A C C A G C G C G C G A G A G A G A T G G A G G G G G G A G G G G C T G C G C G C G T T C G T T A G 50 100 150 200 250 300 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..31
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 39..58
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..62
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0034645
cellular macromolecule biosynthetic process
molecular_function
GO:0003676
nucleic acid binding