IVF0012004 (gene) Melon (IVF77) v1

Overview
NameIVF0012004
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed DNA polymerase
Locationchr06: 23115733 .. 23117964 (+)
RNA-Seq ExpressionIVF0012004
SyntenyIVF0012004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAAATATCTATGGATTTCATTGAAGGTCTACCTAAATTTAATGGATTTAAAGTCATCTTTGTAGTAGTGGATCGATTCAGCAAGTATAGGCACTTCTTGACATTGAAACACCCTTATACTGCAAAGACCGTGGCTAACTTATTCATTAAAGAAATCGTAAGGTTTCATGGATATCCCAAATCTATAGTCTCAAATAGGGATAAGGTCTTTCTAAGTAATTTTTGGAAAGAGCTCTTCAAGATGGCAAGACAAAATTAAATCGAAGCACAACATACCATCCACAATCCAAGGGGCAAATTGAAGTAGTTAATAGAGGAACTGAGACATACCTACGTTGCTTTTGTGGAGAAAGACCAAAAGAGTGGGCTAGATGGCTACATTGGGCAGAATACAGGTGTAACACTATATTCCAGAAATCCTTAGGAATAACACCGTTCCAAGCAGTGTGTAGTCGATTGCCACCCCCCAGATATATTATGGAGATCAAGACGCCCCAAACTCTACAGAGCAGCAAAAAGAGAGAGATATAGCCCTAGGGGCATTGAAAGAGCACCTGAGAATCGCTCAAGAGAAGATGAATAGAAGTGCATATCAAAAGAGAAGAGAAGTAGAATACATGGTGGGAGATATGGTCTTTTTTAAGATAAGACCCTATAGGCAAGTCTCACTGCAAAGAAGAAGAAGAAATGAAAAGTTGTCTCCTAAATTTTTTGGGCCCTATAAAATCTTAGAGAGAATTGGTCCAGTGGCTTATAAGTTGGAACTACCGGAGAAAACATCCATTCACCCTGTATTCCATGTTTCACATGGGAAGACTATGATGAGATCCAACAATGATTTCCCGAGTTTCACCTTGAGAACAAGGTGAATTTGAAGAAGGGGTGTAACGATAGACCCCTATCATCCAGCAATACAGCAAAAGAGGAAAGAAAACCAACAAATAGATAAATTTGTTAATAAAATCTATTAGAAAAGTTAGTTAGGCAAAAAGCTTAAATAGCACCTTAGTCTAAAGGAATAGGCAGTGAAGTTTTATGAAGAAGAGTTCCTTCATTCTTGAGAGAGAGAATAACAAAGAGAGAGAGATTACTTTCTGTATTAGAGTTTCACTATCCATTAACAATCTTACTTGATTGATTACAAGAACGGGTCCCATCACACTTCCCTTATTAACTTGTATCAATCCCTACATACTTTAATTTAAGCGAAAATTACACTTTTGAACCCTTAACTTAAAACTTAAATTCAAGACCATAAGCACCCAAATTAAGTCAATCTTAGTGGGTCTTTAAATTCCATAAGCTCTTATCTCAACTATCAAATATTTTTGGGATTTAGATCCATTATATTAACATGAATCAACAACCTTAAGCACTTTCTAAGATCATCTAAACCACTTCATATTTTGAACTTTATAAAAGTGACTCTCAAACGAACTCTAAAGTTAATGGAACGCCCCTTTTTTACCTCTAACATTCAACTTTAGGACCCGAATATTACGGGTAGTTTAATTTTAATGCTTAGACTTAATGGCCATTTAAGAACTCGAAGAAAACTCACTTAAATTACTCCAACACTTACCAAACACTTAGCAAAGTACCCTAAAGTTCGATGGAAAACCCTCTATCCACCTTCAACTATCGAATCCTAACCTCCAAAAACCGTCGGTTGTTTAATAATAGGACCGAAACTCAATGGGCACTCAAAACCCACTCAATAAATCTTAGAATCTTACCCAAATTGTGTGAAAAGATCCAATTCCAAGCTTCCTAAAGGCTGAACAGCGGCTAAAATCTCCGAGAACTCCAAATCTAACAATAAAATGTAATGGGTATTGCAAAATCAAAGCGGAAACTAAATGGGTATTCAAAAATCTTCGACAAATTCATTTAAAATACACTAAAATAAGCAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG

mRNA sequence

ATGGACAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG

Coding sequence (CDS)

ATGGACAAATCCTTATCCAAACTCGAAGATCCAACTACCAGTGGGAATGAGAGTCGTGAACGGTATGATGATGAAAAGGTGCAACTCAAGTGTAGCGCACGCTTGCGGACTGCAACGGCGCGACGAAGCCCGCGTTCAACAACTGGCTGGAGCAGCGGTGAAGACGGGTCGGGCAACGTAAACGTTTGCGGGATGGATCGCCGGAGGAGGGTCGTCGGCGTCGGTGAGTTGCGTGGCTGCTGGCGTGCTTCGCCGAGGAAGGTAGGAGCTTACCAGCGCGCGAGAGAGATGGAGGGGGGAGGGGCTGCGCGCGTTCGTTAG

Protein sequence

MDKSLSKLEDPTTSGNESRERYDDEKVQLKCSARLRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRVVGVGELRGCWRASPRKVGAYQRAREMEGGGAARVR
Homology
[Close]
BLAST of IVF0012004 vs. ExPASy TrEMBL
Match: A0A5A7V3X8 (DNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003050 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 35  LRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 72
           L    AR+SPR TTGWS GEDGSGN N+  +DRRRRV
Sbjct: 479 LHPVLARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 515

[Close]
BLAST of IVF0012004 vs. NCBI nr
Match: KAA0062000.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.69e-06
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 35  LRTATARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 71
           L    AR+SPR TTGWS GEDGSGN N+  +DRRRRV
Sbjct: 479 LHPVLARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 515

[Close]
BLAST of IVF0012004 vs. NCBI nr
Match: TYK05024.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.23e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 40  ARRSPRSTTGWSSGEDGSGNVNVCGMDRRRRV 71
           AR+SPR TTGWS GEDGSGN N+  +DRRRRV
Sbjct: 364 ARQSPRPTTGWSGGEDGSGNANIRRVDRRRRV 395

The following BLAST results are available for this feature:
BLAST of IVF0012004 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012004 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V3X88.0e-0467.57DNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of IVF0012004 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062000.16.69e-0667.57Integrase, catalytic core [Cucumis melo var. makuwa][more]
TYK05024.11.23e-0575.00Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa][more]
BLAST of IVF0012004 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012004.1IVF0012004.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034645 cellular macromolecule biosynthetic process
molecular_function GO:0003676 nucleic acid binding