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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA mRNA sequence ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA Coding sequence (CDS) ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA Protein sequence MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQMGVEKLGILCFNQLI
Homology
BLAST of IVF0011807 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.5e-10 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 1 MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 55
+GGRQI+ EEKSGL G G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1392 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1446
BLAST of IVF0011807 vs. ExPASy TrEMBL
Match: A0A5A7VI97 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001370 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 5.5e-10 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 1 MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 55
+GGRQI+ EEKSGL G G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1000 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1054
BLAST of IVF0011807 vs. NCBI nr
Match: KAA0067084.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 70.9 bits (172), Expect = 2.22e-12 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 1 MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 54
+GGRQI+ EEKSGL G G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1000 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1054
BLAST of IVF0011807 vs. NCBI nr
Match: TYK26319.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 70.9 bits (172), Expect = 2.23e-12 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0
Query: 1 MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 54
+GGRQI+ EEKSGL G G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1392 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1446
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DS88 | 5.5e-10 | 74.55 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100... | [more] |
| A0A5A7VI97 | 5.5e-10 | 74.55 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00137... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067084.1 | 2.22e-12 | 74.55 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK26319.1 | 2.23e-12 | 74.55 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
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