IVF0011807 (gene) Melon (IVF77) v1

Overview
NameIVF0011807
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr04: 15451074 .. 15451256 (-)
RNA-Seq ExpressionIVF0011807
SyntenyIVF0011807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA

mRNA sequence

ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA

Coding sequence (CDS)

ATGGGCGGAAGACAAATCGTGGCGGAAGAGAAATCGGGGCTAGCGCGCGGAATTATGACCGAGGGCGGAAGACAAATCAGGCCGGAAGTGCGTGAGTCGGACGTAGAAGATGGAAGGAGACAGGCGACCGCGCAAATGGGGGTTGAGAAATTAGGGATTTTATGTTTTAATCAATTAATTTAA

Protein sequence

MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQMGVEKLGILCFNQLI
Homology
[Close]
BLAST of IVF0011807 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-10
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1    MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 55
            +GGRQI+ EEKSGL  G    G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1392 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1446

[Close]
BLAST of IVF0011807 vs. ExPASy TrEMBL
Match: A0A5A7VI97 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001370 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.5e-10
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1    MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 55
            +GGRQI+ EEKSGL  G    G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1000 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1054

[Close]
BLAST of IVF0011807 vs. NCBI nr
Match: KAA0067084.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.22e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1    MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 54
            +GGRQI+ EEKSGL  G    G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1000 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1054

[Close]
BLAST of IVF0011807 vs. NCBI nr
Match: TYK26319.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.23e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1    MGGRQIVAEEKSGLARGIMTEGGRQIRPEVRESDVEDGRRQATAQM-GVEKLGIL 54
            +GGRQI+ EEKSGL  G    G +QIR EVRESDVEDGRRQATAQM GVEKLG+L
Sbjct: 1392 VGGRQIMDEEKSGLECGTPIGGEKQIRSEVRESDVEDGRRQATAQMKGVEKLGML 1446

The following BLAST results are available for this feature:
BLAST of IVF0011807 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011807 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DS885.5e-1074.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100... [more]
A0A5A7VI975.5e-1074.55Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G00137... [more]
BLAST of IVF0011807 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067084.12.22e-1274.55gag/pol protein [Cucumis melo var. makuwa][more]
TYK26319.12.23e-1274.55gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of IVF0011807 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011807.1IVF0011807.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding