IVF0011585 (gene) Melon (IVF77) v1

Overview


Name	IVF0011585
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	chr05: 117596 .. 120157 (+)
RNA-Seq Expression	IVF0011585
Synteny	IVF0011585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTAAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTCCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGAACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATGGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGGTGCGAATCGTTTATTCTTTACCTTAATACTTCGGGGTGGAAAATATGAATGTGTGATGCATGTTGATGTACCTCTTGTTAATAACTTTTTCACGCATTGAAACCTCAAGAAACATATTTGCATTTTCCATTTGGGGAAATTCAGTATCCTTGATTAACTTTACATGCATTCTCTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAATCACCCTTGTGCTGAGGTTGGAAGAGAGAAAAAAAATCAAGGCAGCAAATTTCCTGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATCAAAAACTTCAGTCTATTTTTGCCATCCAACATCAAATACTACTTAGGTAGGTATGGCTACTCGGTCGGCAATAAAACAAACTACTATGGTTCTTTTTCTTAGTTATCCTTTTCTTTTTAATTGCTTGTTATGTACATTTGGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACCCAAACCCTGTATTTGAGCAATTTTGCTGAGCGAGTTTTGATTTTCACAAATTTTCATCGTCGAACTTAGCAATGCATTAAGGTTTGTTCTTTTCAATAATTAGCAATGCATTAAGGTTTGTTCTTGCATTAAGGTTTGTTCTTTCCAATAATCTTTCAAGGATTATATAGAGTTTATAAAATGCACTGATTCTGTCCACGTTAAGTTTGAAAATCCCAGTGCGATAGTATTAAGTAATAGAAACATACAAATTTTTCCAATTCTGTTGGACTTTTAATGTCTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATACATTCTCTCATTTTCTGTCTTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGCTTTTTAAGGAGTTGCAAGGAGTCAACTGAGGAATTCTCCTCCCTCCACTTTTTTCTTTGGGAGAAAAGGTTGTTTTCGTAGTAGGTTGAAGTATGTGCTACTTTATGGGGTTTGGGGTGCGAGAAATGATTGGATCTTCAAGGGAGAAATAATCGAATCTTGGATCTTGAAGATTCATTTTTCAGAATTAATCGCTGAGTCATATTTCACTTGATTGGAGCTCTTCCCCTTCTTATAGTTAGCTACACTTTTTGTGAACACCATTCTGTATGTTCATGTATATTATTTCACCTTGTTTTTCAACAAAAGTCTAGTTGGACGTCAATAACAAAATTTATCAGCATTTTGAACGAAAGAAAGGGATGGGATCTTGCTTTATTTATTTGCAATTATTCAATTGAACATGTGTACTTCTTAAAAGAAATTATTGTCAATATTTTCTAGCACAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTGTTGTTTACTTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTACCTCCGTCTTCTTGTTAATCTTTATATTTTCAAGCAGCAGTTGACTGATGTTTGGCTGGCGACTTACATCAGTTGAAATAATTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATACGGATATTTTGCCCCATCTACACAACTAACAATCTTTACCGAAACTGTGTTGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACT

mRNA sequence

CCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTAAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTCCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAACGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGAACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATGGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACT

Coding sequence (CDS)

ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGAACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATGGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD

Homology

[Close]

BLAST of IVF0011585 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-50
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of IVF0011585 vs. ExPASy TrEMBL
Match: A0A5D3DEB7 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001120 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.1e-65
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.0e-64
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. ExPASy TrEMBL
Match: A0A1S3BN38 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.0e-64
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.5e-60
Identity = 130/138 (94.20%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTED A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. NCBI nr
Match: TYK21740.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (652), Expect = 2.58e-85
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 138
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo] >KAA0040117.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 2.12e-84
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 138
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. NCBI nr
Match: XP_004149640.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_021664 [Cucumis sativus])

HSP 1 Score: 251 bits (642), Expect = 8.64e-84
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 138
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 1.18e-81
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNSIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAEKELIQV 120

Query: 121 QELFSQVADNCLNLKKAD 138
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 244 bits (622), Expect = 9.69e-81
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTED A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAERELIQV 120

Query: 121 QELFSQVADNCLNLKKAD 138
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of IVF0011585 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

The following BLAST results are available for this feature:

BLAST of IVF0011585 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	1.9e-50	78.42	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]

BLAST of IVF0011585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEB7	8.1e-65	100.00	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]
A0A5A7TEZ9	4.0e-64	99.28	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]
A0A1S3BN38	4.0e-64	99.28	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KZ00	1.2e-63	98.55	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A6J1DHM9	3.5e-60	94.20	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]

BLAST of IVF0011585 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21740.1	2.58e-85	100.00	mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa...	[more]
XP_008449895.1	2.12e-84	99.28	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]...	[more]
XP_004149640.1	8.64e-84	98.55	mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN540...	[more]
XP_038902781.1	1.18e-81	95.65	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]	[more]
XP_038893979.1	9.69e-81	94.93	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ...	[more]

BLAST of IVF0011585 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	1.3e-51	78.42	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..130
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 1..130 e-value: 1.2E-28 score: 101.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 e-value: 3.1E-27 score: 95.6
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..136
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011585.2	IVF0011585.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003712	transcription coregulator activity