IVF0009425 (gene) Melon (IVF77) v1

Overview


Name	IVF0009425
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 5538815 .. 5539075 (-)
RNA-Seq Expression	IVF0009425
Synteny	IVF0009425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

mRNA sequence

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

Coding sequence (CDS)

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

Protein sequence

MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSLDDMHGFIEIMEEERMDYCTVLLREDP

Homology

[Close]

BLAST of IVF0009425 vs. ExPASy TrEMBL
Match: A0A5D3BFC4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00670 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           M  +  + + D LRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL
Sbjct: 91  MYSQGFDMSQDDLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 150

Query: 61  DDMHGFIEIMEEERMDYCTVLLREDP 87
           DDMHGFIEIMEEERMDYCTVLLREDP
Sbjct: 151 DDMHGFIEIMEEERMDYCTVLLREDP 176

[Close]

BLAST of IVF0009425 vs. ExPASy TrEMBL
Match: A0A5A7URM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00200 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.6e-21
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IH+A++ ANDQLR IVE     LQ+ETT+ +EVL QL+A+P+LSRLDR H S  LF +L
Sbjct: 145 LIHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNL 204

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           DDM GF+EI+E+E+MD+CTVLLRED
Sbjct: 205 DDMRGFLEILEDEKMDFCTVLLRED 229

[Close]

BLAST of IVF0009425 vs. ExPASy TrEMBL
Match: A0A5D3CSY3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold513G00140 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.4e-21
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 3   HEALEY---ANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRS 62
           H+ +E+   ANDQLRAIVE P   LQ+ETT+R+EVL QL+A+P+LSRLD  HCS  LF +
Sbjct: 124 HDLVEHPMCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCN 183

Query: 63  LDDMHGFIEIMEEERMDYCTVLLRE 85
           LDDM GF+EI+E+E+MD+CTVLLRE
Sbjct: 184 LDDMRGFLEILEDEKMDFCTVLLRE 208

[Close]

BLAST of IVF0009425 vs. ExPASy TrEMBL
Match: A0A5A7V3G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00270 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IHE +EY NDQLRAIVE P+  L +ETT+R+EVLR+L AM +LSRLDRA CS SLF SL
Sbjct: 56  LIHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSL 115

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           D+M   + +  EE+M++CT+LLRED
Sbjct: 116 DNMCSSLRMTNEEKMEFCTILLRED 140

[Close]

BLAST of IVF0009425 vs. ExPASy TrEMBL
Match: A0A5A7UUF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001110 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.2e-15
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +I +A+E ANDQLR I E P   +QDE   R EV+RQL  +P+LS LDRA C   L ++L
Sbjct: 124 VIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNL 183

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
            DM  F+ + EE +MDYC V+L++D
Sbjct: 184 ADMKAFLVVPEEMKMDYCKVILQDD 208

[Close]

BLAST of IVF0009425 vs. NCBI nr
Match: KAA0051644.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97963.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 4.20e-46
Identity = 76/86 (88.37%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           M  +  + + D LRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL
Sbjct: 91  MYSQGFDMSQDDLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 150

Query: 61  DDMHGFIEIMEEERMDYCTVLLREDP 86
           DDMHGFIEIMEEERMDYCTVLLREDP
Sbjct: 151 DDMHGFIEIMEEERMDYCTVLLREDP 176

[Close]

BLAST of IVF0009425 vs. NCBI nr
Match: KAA0060299.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 8.64e-29
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IHE +EY NDQLRAIVE P+  L +ETT+R+EVLR+L AM +LSRLDRA CS SLF SL
Sbjct: 56  LIHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSL 115

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 85
           D+M   + +  EE+M++CT+LLRED
Sbjct: 116 DNMCSSLRMTNEEKMEFCTILLRED 140

[Close]

BLAST of IVF0009425 vs. NCBI nr
Match: KAA0056139.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.28e-28
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IH+A++ ANDQLR IVE     LQ+ETT+ +EVL QL+A+P+LSRLDR H S  LF +L
Sbjct: 145 LIHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNL 204

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 85
           DDM GF+EI+E+E+MD+CTVLLRED
Sbjct: 205 DDMRGFLEILEDEKMDFCTVLLRED 229

[Close]

BLAST of IVF0009425 vs. NCBI nr
Match: TYK14144.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 2.72e-28
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 3   HEALEY---ANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRS 62
           H+ +E+   ANDQLRAIVE P   LQ+ETT+R+EVL QL+A+P+LSRLD  HCS  LF +
Sbjct: 124 HDLVEHPMCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCN 183

Query: 63  LDDMHGFIEIMEEERMDYCTVLLRE 84
           LDDM GF+EI+E+E+MD+CTVLLRE
Sbjct: 184 LDDMRGFLEILEDEKMDFCTVLLRE 208

[Close]

BLAST of IVF0009425 vs. NCBI nr
Match: KAA0051652.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97958.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.51e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IH ALE  NDQLR I E P RTL ++T + +E LR L  MP+LS LDRA C   L   +
Sbjct: 25  VIHMALECMNDQLRTIAEWPARTLTNDTHVCQEFLRLLRKMPNLSSLDRALCQRELMSHI 84

Query: 61  DDMHGFIEIMEEERMDYCTVLL 82
           DDM GF+E+ ++ER ++C VLL
Sbjct: 85  DDMRGFVEMTDDERKNFCRVLL 106

The following BLAST results are available for this feature:

BLAST of IVF0009425 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFC4	2.7e-34	88.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7URM1	2.6e-21	63.53	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CSY3	3.4e-21	64.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V3G0	7.7e-21	62.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UUF7	8.2e-15	50.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0009425 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051644.1	4.20e-46	88.37	retrotransposon protein [Cucumis melo var. makuwa] >TYJ97963.1 retrotransposon p...	[more]
KAA0060299.1	8.64e-29	62.35	retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon p...	[more]
KAA0056139.1	2.28e-28	63.53	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14144.1	2.72e-28	64.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051652.1	1.51e-20	52.44	retrotransposon protein [Cucumis melo var. makuwa] >TYJ97958.1 retrotransposon p...	[more]

BLAST of IVF0009425 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009425.1	IVF0009425.1	mRNA