IVF0008444 (gene) Melon (IVF77) v1

Overview
NameIVF0008444
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRING-H2 finger protein ATL66
Locationchr11: 21476515 .. 21476766 (+)
RNA-Seq ExpressionIVF0008444
SyntenyIVF0008444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA

mRNA sequence

ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA

Coding sequence (CDS)

ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA

Protein sequence

MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRRVQADKKGSREARMWKLWKSFVVS
Homology
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7UGY0 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003020 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1   MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
           MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR
Sbjct: 38  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 97

Query: 61  VQADKKGSREARMWKLWKSFVVS 84
           VQADKKGSREARMWKLWKSFVVS
Sbjct: 98  VQADKKGSREARMWKLWKSFVVS 120

BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5D3BIM9 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00190 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
          MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR
Sbjct: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60

Query: 61 VQADKKGSREARMWKLWKSFVVS 84
          VQADKKGSREARMWKLWKSFVVS
Sbjct: 61 VQADKKGSREARMWKLWKSFVVS 83

BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.7e-14
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
          M  C+ETF DVGSN   GYEGFS +DGN+M+IPMMYSQG+DM   DIMGT+P  S+EGR 
Sbjct: 1  MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61 VQADKK 67
            +  K
Sbjct: 61 GSSGSK 66

BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5D3CIS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00710 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.4e-13
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 2   GACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRRV 61
           G  +ETFV+VGSNV GGYEGF   DGN+++IP MYSQGLDM   DIMGT+P  +S+GR  
Sbjct: 277 GGHVETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNA 336

Query: 62  QADKKGSREARMW 75
                 SR  R W
Sbjct: 337 -----SSRSKRKW 344

BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.4e-13
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 2   GACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRRV 61
           G  +ETFV+VGSNV GGYEGF   DGN+++IP MYSQGLDM   DIMGT+P  +S+GR  
Sbjct: 272 GGHVETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNA 331

Query: 62  QADKKGSREARMW 75
                 SR  R W
Sbjct: 332 -----SSRSKRKW 339

BLAST of IVF0008444 vs. NCBI nr
Match: TYJ98275.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 4.94e-55
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
          MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR
Sbjct: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60

Query: 61 VQADKKGSREARMWKLWKSFVVS 83
          VQADKKGSREARMWKLWKSFVVS
Sbjct: 61 VQADKKGSREARMWKLWKSFVVS 83

BLAST of IVF0008444 vs. NCBI nr
Match: KAA0054520.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 1.56e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1   MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
           MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR
Sbjct: 38  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 97

Query: 61  VQADKKGSREARMWKLWKSFVVS 83
           VQADKKGSREARMWKLWKSFVVS
Sbjct: 98  VQADKKGSREARMWKLWKSFVVS 120

BLAST of IVF0008444 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 8.65e-20
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 60
          M  C+ETF DVGSN   GYEGFS +DGN+M+IPMMYSQG+DM   DIMGT+P  S+EGR 
Sbjct: 1  MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61 VQADKK 66
            +  K
Sbjct: 61 GSSGSK 66

BLAST of IVF0008444 vs. NCBI nr
Match: KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.18e-17
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 2   GACLETFVDVGSNVSGGYEGF-SNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRR 61
           G  +ETFVDV SNVSG YEG  S +DGNN++IP MYSQGLDM P DIMGT+P  +S  R 
Sbjct: 58  GGRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRN 117

Query: 62  VQADKKGSR 69
             ++ K  R
Sbjct: 118 ASSELKRKR 126

BLAST of IVF0008444 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.02e-17
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 2   GACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRRV 61
           G  +ETFV+VGSNV GGYEGF   DGN+++IP MYSQGLDM   DIMGT+P  +S+GR  
Sbjct: 272 GGHVETFVNVGSNVIGGYEGFIGNDGNDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNA 331

Query: 62  QADKKGSREARMW 74
                 SR  R W
Sbjct: 332 S-----SRSKRKW 339

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UGY04.2e-40100.00RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3BIM94.2e-40100.00RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7V4696.7e-1462.12Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CIS87.4e-1357.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UNI77.4e-1357.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ98275.14.94e-55100.00RING-H2 finger protein ATL66 [Cucumis melo var. makuwa][more]
KAA0054520.11.56e-54100.00RING-H2 finger protein ATL66 [Cucumis melo var. makuwa][more]
KAA0060529.18.65e-2062.12retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0061395.15.18e-1759.42retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon p... [more]
KAA0056167.16.02e-1757.53retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008444.1IVF0008444.1mRNA