IVF0008444 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA ATGGGAGCATGCTTAGAGACATTCGTCGATGTAGGGTCAAATGTGTCGGGTGGGTACGAAGGATTTTCCAATGAAGATGGAAACAATATGAAGATCCCTATGATGTACAGCCAGGGACTTGACATGCCCCCCAAGGACATCATGGGTACACAACCTAGTCACTCGAGTGAGGGTAGACGGGTTCAAGCAGATAAAAAAGGAAGTAGGGAGGCCAGAATGTGGAAACTGTGGAAATCATTCGTAGTATCATGA MGACLETFVDVGSNVSGGYEGFSNEDGNNMKIPMMYSQGLDMPPKDIMGTQPSHSSEGRRVQADKKGSREARMWKLWKSFVVS Homology
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7UGY0 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003020 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5D3BIM9 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00190 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 6.7e-14 Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5D3CIS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00710 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.4e-13 Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0
BLAST of IVF0008444 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.4e-13 Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0
BLAST of IVF0008444 vs. NCBI nr
Match: TYJ98275.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]) HSP 1 Score: 174 bits (442), Expect = 4.94e-55 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of IVF0008444 vs. NCBI nr
Match: KAA0054520.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]) HSP 1 Score: 174 bits (442), Expect = 1.56e-54 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of IVF0008444 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 88.2 bits (217), Expect = 8.65e-20 Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 0
BLAST of IVF0008444 vs. NCBI nr
Match: KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 81.3 bits (199), Expect = 5.18e-17 Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0
BLAST of IVF0008444 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 84.3 bits (207), Expect = 6.02e-17 Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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