IVF0007408 (gene) Melon (IVF77) v1

Overview


Name	IVF0007408
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	mRNA cap-binding protein
Location	chr04: 24990149 .. 24990410 (-)
RNA-Seq Expression	IVF0007408
Synteny	IVF0007408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCGTAGGCGAGAAGAGGGATTTTGATTCTGCCAACGACAACAACAAGCCTAACTCTGCTCAACCACTTCTTGATTCTTCTTTTCAACCCTCACTCGCTGATGATACTAATGCCAAAGAAGCTGAAGAATTTAGTGAACGCATAGCTCGAGACCTTAAAGATGGCCTTCATCCTCTAAAGGTACTCATTCTATCTCTCTCTCCCTTGCTTTCTCTTGTAGACTCAAATACGTGCATATAGTTTATCTGAATTTTGA

mRNA sequence

ATGGAGTTCGTAGGCGAGAAGAGGGATTTTGATTCTGCCAACGACAACAACAAGCCTAACTCTGCTCAACCACTTCTTGATTCTTCTTTTCAACCCTCACTCGCTGATGATACTAATGCCAAAGAAGCTGAAGAATTTAGTGAACGCATAGCTCGAGACCTTAAAGATGGCCTTCATCCTCTAAAGACTCAAATACGTGCATATAGTTTATCTGAATTTTGA

Coding sequence (CDS)

ATGGAGTTCGTAGGCGAGAAGAGGGATTTTGATTCTGCCAACGACAACAACAAGCCTAACTCTGCTCAACCACTTCTTGATTCTTCTTTTCAACCCTCACTCGCTGATGATACTAATGCCAAAGAAGCTGAAGAATTTAGTGAACGCATAGCTCGAGACCTTAAAGATGGCCTTCATCCTCTAAAGACTCAAATACGTGCATATAGTTTATCTGAATTTTGA

Protein sequence

MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHPLKTQIRAYSLSEF

Homology

[Close]

BLAST of IVF0007408 vs. ExPASy TrEMBL
Match: A0A0A0LI71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842730 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          MEFVGE RDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEE SERIARDLKDGLHP
Sbjct: 1  MEFVGENRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEELSERIARDLKDGLHP 60

Query: 61 LKTQIRAYSLSEF 74
          LKTQ+RAYSLSEF
Sbjct: 61 LKTQMRAYSLSEF 73

[Close]

BLAST of IVF0007408 vs. ExPASy TrEMBL
Match: A0A5A7UUL0 (mRNA cap-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00770 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP
Sbjct: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60

Query: 61 LK 63
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. ExPASy TrEMBL
Match: A0A1S3CMT8 (mRNA cap-binding protein OS=Cucumis melo OX=3656 GN=LOC103502707 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP
Sbjct: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60

Query: 61 LK 63
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. ExPASy TrEMBL
Match: A0A6J1IS20 (mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111479999 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADD-----TNAKEAEEFSERIARDLK 60
          ME V EK+DFDSANDNNK NSAQ +LDSS+ PS+A D      N+KEAE+ SER+ARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLK 63
          DGLHPLK
Sbjct: 61 DGLHPLK 67

[Close]

BLAST of IVF0007408 vs. ExPASy TrEMBL
Match: A0A6J1EVP3 (mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111436995 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADD-----TNAKEAEEFSERIARDLK 60
          ME V EK+DFDSANDNNK NSAQ +LDSS+ PS+A D      N+KEAE+ SER+ARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLK 63
          DGLHPLK
Sbjct: 61 DGLHPLK 67

[Close]

BLAST of IVF0007408 vs. NCBI nr
Match: XP_008464961.1 (PREDICTED: eukaryotic translation initiation factor NCBP [Cucumis melo] >KAA0057191.1 eukaryotic translation initiation factor NCBP [Cucumis melo var. makuwa] >TYK18770.1 eukaryotic translation initiation factor NCBP [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 3.57e-33
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP
Sbjct: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60

Query: 61 LK 62
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. NCBI nr
Match: XP_004141135.1 (eukaryotic translation initiation factor NCBP [Cucumis sativus] >KAE8651273.1 hypothetical protein Csa_002372 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.61e-31
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          MEFVGE RDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEE SERIARDLKDGLHP
Sbjct: 1  MEFVGENRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEELSERIARDLKDGLHP 60

Query: 61 LK 62
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. NCBI nr
Match: XP_038904120.1 (eukaryotic translation initiation factor NCBP isoform X2 [Benincasa hispida])

HSP 1 Score: 106 bits (264), Expect = 2.85e-26
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          ME VGEKRDFDSANDNNK NSAQPL DSS  PSL+DDTNAKEAE+ SER+ARDLKDGLHP
Sbjct: 1  MELVGEKRDFDSANDNNKLNSAQPLFDSSHPPSLSDDTNAKEAEDLSERVARDLKDGLHP 60

Query: 61 LK 62
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. NCBI nr
Match: XP_038904119.1 (eukaryotic translation initiation factor NCBP isoform X1 [Benincasa hispida])

HSP 1 Score: 106 bits (264), Expect = 5.71e-26
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADDTNAKEAEEFSERIARDLKDGLHP 60
          ME VGEKRDFDSANDNNK NSAQPL DSS  PSL+DDTNAKEAE+ SER+ARDLKDGLHP
Sbjct: 1  MELVGEKRDFDSANDNNKLNSAQPLFDSSHPPSLSDDTNAKEAEDLSERVARDLKDGLHP 60

Query: 61 LK 62
          LK
Sbjct: 61 LK 62

[Close]

BLAST of IVF0007408 vs. NCBI nr
Match: XP_022930593.1 (eukaryotic translation initiation factor NCBP [Cucurbita moschata] >XP_022980712.1 eukaryotic translation initiation factor NCBP [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 1.12e-19
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MEFVGEKRDFDSANDNNKPNSAQPLLDSSFQPSLADD-----TNAKEAEEFSERIARDLK 60
          ME V EK+DFDSANDNNK NSAQ +LDSS+ PS+A D      N+KEAE+ SER+ARDLK
Sbjct: 1  MELVAEKKDFDSANDNNKLNSAQAVLDSSYPPSVAADETGSNNNSKEAEDLSERVARDLK 60

Query: 61 DGLHPLK 62
          DGLHPLK
Sbjct: 61 DGLHPLK 67

The following BLAST results are available for this feature:

BLAST of IVF0007408 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI71	2.6e-30	95.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842730 PE=4 SV=1	[more]
A0A5A7UUL0	1.5e-25	100.00	mRNA cap-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CMT8	1.5e-25	100.00	mRNA cap-binding protein OS=Cucumis melo OX=3656 GN=LOC103502707 PE=3 SV=1	[more]
A0A6J1IS20	4.1e-15	70.15	mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111479999 PE=3 SV=1	[more]
A0A6J1EVP3	4.1e-15	70.15	mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111436995 PE=3 SV=1	[more]

BLAST of IVF0007408 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464961.1	3.57e-33	100.00	PREDICTED: eukaryotic translation initiation factor NCBP [Cucumis melo] >KAA0057...	[more]
XP_004141135.1	1.61e-31	96.77	eukaryotic translation initiation factor NCBP [Cucumis sativus] >KAE8651273.1 hy...	[more]
XP_038904120.1	2.85e-26	85.48	eukaryotic translation initiation factor NCBP isoform X2 [Benincasa hispida]	[more]
XP_038904119.1	5.71e-26	85.48	eukaryotic translation initiation factor NCBP isoform X1 [Benincasa hispida]	[more]
XP_022930593.1	1.12e-19	70.15	eukaryotic translation initiation factor NCBP [Cucurbita moschata] >XP_022980712...	[more]

BLAST of IVF0007408 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007408.1	IVF0007408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity