IVF0007081 (gene) Melon (IVF77) v1

Overview


Name	IVF0007081
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr12: 14582404 .. 14582856 (+)
RNA-Seq Expression	IVF0007081
Synteny	IVF0007081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATCATGAAGACATCCCAACGATGTATAGCCAAGGAGTGCTTATGTCACTAGATGAGATGTTTGGAACACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTAGAAGTAAGAGAAAACAAGGTAGCCAACATTATGAAACGGTAGAGGTGATCAGGAGTGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAGATTGGCTAAAAGAGAAACGTGCAATGAAGGTCGAATTACGTGCTCTAGTCGTGAAACAGCTGCAAGATATCCCTAAACTACAAAACCGAGATAGGCCAAAGATTATACAAATCCTATTTCATAGTGTGGAGGGCATTGAGGGATTCCTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTAGAAAATTGTTTGACCAATTAA

mRNA sequence

ATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATCATGAAGACATCCCAACGATGTATAGCCAAGGAGTGCTTATGTCACTAGATGAGATGTTTGGAACACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTAGAAGTAAGAGAAAACAAGGTAGCCAACATTATGAAACGGTAGAGGTGATCAGGAGTGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAGATTGGCTAAAAGAGAAACGTGCAATGAAGGTCGAATTACGTGCTCTAGTCGTGAAACAGCTGCAAGATATCCCTAAACTACAAAACCGAGATAGGCCAAAGATTATACAAATCCTATTTCATAGTGTGGAGGGCATTGAGGGATTCCTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTAGAAAATTGTTTGACCAATTAA

Coding sequence (CDS)

ATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATCATGAAGACATCCCAACGATGTATAGCCAAGGAGTGCTTATGTCACTAGATGAGATGTTTGGAACACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTAGAAGTAAGAGAAAACAAGGTAGCCAACATTATGAAACGGTAGAGGTGATCAGGAGTGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAGATTGGCTAAAAGAGAAACGTGCAATGAAGGTCGAATTACGTGCTCTAGTCGTGAAACAGCTGCAAGATATCCCTAAACTACAAAACCGAGATAGGCCAAAGATTATACAAATCCTATTTCATAGTGTGGAGGGCATTGAGGGATTCCTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTAGAAAATTGTTTGACCAATTAA

Protein sequence

MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLENCLTN

Homology

[Close]

BLAST of IVF0007081 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET
Sbjct: 58  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 117

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH
Sbjct: 118 VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 177

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLENCLTN 151
           SVEGIEGFLSIPTELKLEYCNVLLENCLTN
Sbjct: 178 SVEGIEGFLSIPTELKLEYCNVLLENCLTN 207

[Close]

BLAST of IVF0007081 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.5e-59
Identity = 118/146 (80.82%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQLQDIPKL+++DR K++QILF 
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 147
           S+E IEGFLSIPTELKLEYCN+LL+N
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0007081 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.5e-59
Identity = 118/146 (80.82%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQLQDIPKL+++DR K++QILF 
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 147
           S+E IEGFLSIPTELKLEYCN+LL+N
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0007081 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.0e-56
Identity = 116/146 (79.45%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFN  VPL DSH +DIP MYSQGV MS DEMFG RAGQASER+NCSS SKRKQGS+HYET
Sbjct: 352 MFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYET 411

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVI+SA++FGNDQLKAIA+W KEKRA +VELRA V+KQLQDIP+LQ+RDR K+IQILF 
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 147
           SVE IEGFLSIPTE KLEYCN+LL+N
Sbjct: 472 SVEAIEGFLSIPTERKLEYCNILLQN 497

[Close]

BLAST of IVF0007081 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HYE 
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQLQDIP+L+++DR K++QILF 
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 147
           SVE IEGFLSIPT+LKLEYCN+LLEN
Sbjct: 236 SVEAIEGFLSIPTKLKLEYCNILLEN 261

[Close]

BLAST of IVF0007081 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 298 bits (763), Expect = 5.35e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET
Sbjct: 58  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 117

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH
Sbjct: 118 VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 177

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLENCLTN 150
           SVEGIEGFLSIPTELKLEYCNVLLENCLTN
Sbjct: 178 SVEGIEGFLSIPTELKLEYCNVLLENCLTN 207

[Close]

BLAST of IVF0007081 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (601), Expect = 5.89e-75
Identity = 118/146 (80.82%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YET
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQLQDIPKL+++DR K++QILF 
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 146
           S+E IEGFLSIPTELKLEYCN+LL+N
Sbjct: 279 SLEAIEGFLSIPTELKLEYCNILLQN 304

[Close]

BLAST of IVF0007081 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (566), Expect = 3.15e-70
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HYE 
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQLQDIP+L+++DR K++QILF 
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 146
           SVE IEGFLSIPT+LKLEYCN+LLEN
Sbjct: 236 SVEAIEGFLSIPTKLKLEYCNILLEN 261

[Close]

BLAST of IVF0007081 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (581), Expect = 1.14e-69
Identity = 116/146 (79.45%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 60
           MFN  VPL DSH +DIP MYSQGV MS DEMFG RAGQASER+NCSS SKRKQGS+HYET
Sbjct: 352 MFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYET 411

Query: 61  VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 120
           VEVI+SA++FGNDQLKAIA+W KEKRA +VELRA V+KQLQDIP+LQ+RDR K+IQILF 
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 121 SVEGIEGFLSIPTELKLEYCNVLLEN 146
           SVE IEGFLSIPTE KLEYCN+LL+N
Sbjct: 472 SVEAIEGFLSIPTERKLEYCNILLQN 497

[Close]

BLAST of IVF0007081 vs. NCBI nr
Match: KAA0066604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (497), Expect = 1.26e-61
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 19  MYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAI 78
           MYSQGV MS +EMFG R GQASERRNCSS SKRK+GS+HYETVEVIRSAM+FGNDQLK I
Sbjct: 1   MYSQGVYMSQNEMFGIRVGQASERRNCSSGSKRKRGSEHYETVEVIRSAMEFGNDQLKTI 60

Query: 79  ADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLE 138
           A+W KEKR  +VELRA VVKQLQ+I +L +RDR K++QILFHSVE IEGFLSIP ELKLE
Sbjct: 61  ANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLE 120

Query: 139 YCNVLLEN 146
           YCN+LL+N
Sbjct: 121 YCNILLQN 128

The following BLAST results are available for this feature:

BLAST of IVF0007081 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVB7	1.6e-77	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	9.5e-59	80.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	9.5e-59	80.82	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7SQU2	2.0e-56	79.45	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BZU3	1.1e-54	77.40	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0007081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042340.1	5.35e-101	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]
XP_008441954.1	5.89e-75	80.82	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0031678.1	3.15e-70	77.40	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0033290.1	1.14e-69	79.45	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0066604.1	1.26e-61	78.13	retrotransposon protein [Cucumis melo var. makuwa] >TYK14214.1 retrotransposon p...	[more]

BLAST of IVF0007081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007081.1	IVF0007081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding