Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG mRNA sequence
ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG Coding sequence (CDS)
ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG Protein sequence
MARGSAWLATRLVSVWFVAGAIHASDRPCYDSSPFGLCRTTYEEGEVNTTGKGRRVTDGARLREEKSVVYGKSEKEKGDPTRHKSLHHATTKLHKQRQICRRMRRCVAMVTGRKRRRKIEIS
Homology
BLAST of IVF0007024 vs. NCBI nr
Match:
KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 51.6 bits (122), Expect = 1.07e-04
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 0
Query: 2 ARGSAWLATRLVSVWFVAGAIHASDRPCYDSSPFGLCRTTYEEGEVNTTGKGRRVTDGAR 61 AR SA + RL +HA+D PCY S P L R YE GEVN G+G ++ D AR Sbjct: 223 ARESARMEERLA-----VRVVHATDCPCYSSGPSRLRRMVYEGGEVNMIGRGWKLADDAR 279 Query: 62 LR 63 LR Sbjct: 283 LR 279
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
KAA0040420.1 1.07e-04 46.77 NBS-LRR type resistance protein [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
A T G G C T C G C G G C T C G G C T T G G C T C G C G A C T C G A C T C G T C T C G G T T T G G T T T G T G G C T G G G G C T A T T C A C G C A T C A G A T C G T C C A T G C T A C G A C T C G A G T C C T T T T G G G C T T T G T C G G A C G A C G T A T G A G G A A G G T G A G G T G A A C A C G A C T G G G A A A G G T C G A A G G G T G A C C G A C G G C G C T C G G C T A A G G G A A G A G A A G T C G G T G G T C T A T G G G A A A A G T G A G A A A G A G A A A G G G G A T C C G A C G C G A C A T A A A T C G C T C C A C C A C G C G A C T A C T A A A C T T C A T A A A C A G A G A C A A A T C T G C C G G C G A A T G A G G A G A T G C G T T G C G A T G G T A A C T G G G C G G A A A A G A A G G A G G A A G A T T G A G A T A A G T T A G 50 100 150 200 250 300 350 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 70..86
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 70..94
Relationships
The following mRNA feature(s) are a part of this gene: