IVF0007024 (gene) Melon (IVF77) v1

Overview


Name	IVF0007024
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 12235290 .. 12235658 (-)
RNA-Seq Expression	IVF0007024
Synteny	IVF0007024

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG

mRNA sequence

ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG

Coding sequence (CDS)

ATGGCTCGCGGCTCGGCTTGGCTCGCGACTCGACTCGTCTCGGTTTGGTTTGTGGCTGGGGCTATTCACGCATCAGATCGTCCATGCTACGACTCGAGTCCTTTTGGGCTTTGTCGGACGACGTATGAGGAAGGTGAGGTGAACACGACTGGGAAAGGTCGAAGGGTGACCGACGGCGCTCGGCTAAGGGAAGAGAAGTCGGTGGTCTATGGGAAAAGTGAGAAAGAGAAAGGGGATCCGACGCGACATAAATCGCTCCACCACGCGACTACTAAACTTCATAAACAGAGACAAATCTGCCGGCGAATGAGGAGATGCGTTGCGATGGTAACTGGGCGGAAAAGAAGGAGGAAGATTGAGATAAGTTAG

Protein sequence

MARGSAWLATRLVSVWFVAGAIHASDRPCYDSSPFGLCRTTYEEGEVNTTGKGRRVTDGARLREEKSVVYGKSEKEKGDPTRHKSLHHATTKLHKQRQICRRMRRCVAMVTGRKRRRKIEIS

Homology

[Close]

BLAST of IVF0007024 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.07e-04
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 2   ARGSAWLATRLVSVWFVAGAIHASDRPCYDSSPFGLCRTTYEEGEVNTTGKGRRVTDGAR 61
           AR SA +  RL         +HA+D PCY S P  L R  YE GEVN  G+G ++ D AR
Sbjct: 223 ARESARMEERLA-----VRVVHATDCPCYSSGPSRLRRMVYEGGEVNMIGRGWKLADDAR 279

Query: 62  LR 63
           LR
Sbjct: 283 LR 279

The following BLAST results are available for this feature:

BLAST of IVF0007024 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007024 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007024 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040420.1	1.07e-04	46.77	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007024 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007024.2	IVF0007024.2	mRNA