Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG
mRNA sequence
ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG
Coding sequence (CDS)
ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG
Protein sequence
MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFNGVDHNVFKLINACTSAKEG
Homology
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match:
A0A5A7VAY3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001490 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN
Sbjct: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
Query: 61 GVDHNVFKLINACTSAKEG 80
GVDHNVFKLINACTSAKEG
Sbjct: 61 GVDHNVFKLINACTSAKEG 79
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match:
A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
M AFL S+D+ CWKSVLTG E PS+KD A KTT K EIT TKE DEE GN +ALNALFN
Sbjct: 1 MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60
Query: 61 GVDHNVFKLINACTSAKE 79
G++HNVFKLIN CTSAKE
Sbjct: 61 GINHNVFKLINTCTSAKE 78
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match:
A0A5D3C137 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00680 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFL SVD+ WKSV TGWE PSVKD A KTT K EIT TK+EDEE FGNSKALNALFN
Sbjct: 1 MIAFLKSVDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFN 60
Query: 61 GVDHNVFKLIN 72
GVD NVFKLIN
Sbjct: 61 GVDQNVFKLIN 71
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match:
A0A5D3BG63 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00170 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 53/78 (67.95%), Postives = 57/78 (73.08%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFL SVD+ WKSVLTGWE PS+ D T K +I KEEDEE FGNSK LNAL N
Sbjct: 28 MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87
Query: 61 GVDHNVFKLINACTSAKE 79
GVD NV KLIN CTSAK+
Sbjct: 88 GVDQNVLKLINTCTSAKK 105
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match:
A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)
HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
+IAF+ S+D+ CWK+++ G E PS KDVA K T K+EIT +K++DE FGNS+ALNA+FN
Sbjct: 35 IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94
Query: 61 GVDHNVFKLINACTSAKE 79
GVD N+FK IN C AKE
Sbjct: 95 GVDQNIFKWINTCLFAKE 112
BLAST of IVF0006604 vs. NCBI nr
Match:
KAA0065462.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 160 bits (405), Expect = 1.65e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN
Sbjct: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
Query: 61 GVDHNVFKLINACTSAKEG 79
GVDHNVFKLINACTSAKEG
Sbjct: 61 GVDHNVFKLINACTSAKEG 79
BLAST of IVF0006604 vs. NCBI nr
Match:
KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (280), Expect = 8.86e-29
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
M AFL S+D+ CWKSVLTG E PS+KD A KTT K EIT TKE DEE GN +ALNALFN
Sbjct: 1 MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60
Query: 61 GVDHNVFKLINACTSAKE 78
G++HNVFKLIN CTSAKE
Sbjct: 61 GINHNVFKLINTCTSAKE 78
BLAST of IVF0006604 vs. NCBI nr
Match:
KAA0047417.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 107 bits (268), Expect = 1.71e-26
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFL SVD+ WKSV TGWE PSVKD A KTT K EIT TK+EDEE FGNSKALNALFN
Sbjct: 1 MIAFLKSVDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFN 60
Query: 61 GVDHNVFKLIN 71
GVD NVFKLIN
Sbjct: 61 GVDQNVFKLIN 71
BLAST of IVF0006604 vs. NCBI nr
Match:
TYJ98064.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 102 bits (253), Expect = 8.59e-24
Identity = 53/78 (67.95%), Postives = 57/78 (73.08%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
MIAFL SVD+ WKSVLTGWE PS+ D T K +I KEEDEE FGNSK LNAL N
Sbjct: 28 MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87
Query: 61 GVDHNVFKLINACTSAKE 78
GVD NV KLIN CTSAK+
Sbjct: 88 GVDQNVLKLINTCTSAKK 105
BLAST of IVF0006604 vs. NCBI nr
Match:
KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 99.8 bits (247), Expect = 1.52e-23
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0
Query: 1 MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
+IAF+ S+D+ CWK+++ G E PS KDVA K T K+EIT +K++DE FGNS+ALNA+FN
Sbjct: 35 IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94
Query: 61 GVDHNVFKLINACTSAKE 78
GVD N+FK IN C AKE
Sbjct: 95 GVDQNIFKWINTCLFAKE 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VAY3 | 7.0e-37 | 100.00 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G0... | [more] |
A0A5D3CDY8 | 2.2e-22 | 73.08 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... | [more] |
A0A5D3C137 | 5.4e-21 | 80.28 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119... | [more] |
A0A5D3BG63 | 3.0e-19 | 67.95 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
A0A5A7SVY3 | 1.5e-18 | 60.26 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
Match Name | E-value | Identity | Description | |
KAA0065462.1 | 1.65e-49 | 100.00 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0038855.1 | 8.86e-29 | 73.08 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... | [more] |
KAA0047417.1 | 1.71e-26 | 80.28 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [... | [more] |
TYJ98064.1 | 8.59e-24 | 67.95 | gag-proteinase polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0035422.1 | 1.52e-23 | 60.26 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase... | [more] |
Match Name | E-value | Identity | Description | |