IVF0006604 (gene) Melon (IVF77) v1

Overview
NameIVF0006604
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr10: 24127579 .. 24127818 (-)
RNA-Seq ExpressionIVF0006604
SyntenyIVF0006604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

mRNA sequence

ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

Coding sequence (CDS)

ATGATTGCCTTTCTTAATTCAGTGGATAACATATGTTGGAAATCCGTTTTGACAGGATGGGAATCGCCTTCTGTTAAAGATGTTGCTAGCAAAACTACTCCGAAGCGTGAGATTACCCGGACAAAGGAGGAAGATGAAGAATTGTTTGGAAATTCGAAGGCTCTAAATGCATTGTTCAATGGTGTGGACCATAATGTCTTCAAGCTTATTAACGCATGTACCTCAGCAAAAGAAGGCTAG

Protein sequence

MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFNGVDHNVFKLINACTSAKEG
Homology
BLAST of IVF0006604 vs. ExPASy TrEMBL
Match: A0A5A7VAY3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001490 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN
Sbjct: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60

Query: 61 GVDHNVFKLINACTSAKEG 80
          GVDHNVFKLINACTSAKEG
Sbjct: 61 GVDHNVFKLINACTSAKEG 79

BLAST of IVF0006604 vs. ExPASy TrEMBL
Match: A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          M AFL S+D+ CWKSVLTG E PS+KD A KTT K EIT TKE DEE  GN +ALNALFN
Sbjct: 1  MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60

Query: 61 GVDHNVFKLINACTSAKE 79
          G++HNVFKLIN CTSAKE
Sbjct: 61 GINHNVFKLINTCTSAKE 78

BLAST of IVF0006604 vs. ExPASy TrEMBL
Match: A0A5D3C137 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00680 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          MIAFL SVD+  WKSV TGWE PSVKD A KTT K EIT TK+EDEE FGNSKALNALFN
Sbjct: 1  MIAFLKSVDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFN 60

Query: 61 GVDHNVFKLIN 72
          GVD NVFKLIN
Sbjct: 61 GVDQNVFKLIN 71

BLAST of IVF0006604 vs. ExPASy TrEMBL
Match: A0A5D3BG63 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00170 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.0e-19
Identity = 53/78 (67.95%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
           MIAFL SVD+  WKSVLTGWE PS+ D     T K +I   KEEDEE FGNSK LNAL N
Sbjct: 28  MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87

Query: 61  GVDHNVFKLINACTSAKE 79
           GVD NV KLIN CTSAK+
Sbjct: 88  GVDQNVLKLINTCTSAKK 105

BLAST of IVF0006604 vs. ExPASy TrEMBL
Match: A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
           +IAF+ S+D+ CWK+++ G E PS KDVA K T K+EIT +K++DE  FGNS+ALNA+FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GVDHNVFKLINACTSAKE 79
           GVD N+FK IN C  AKE
Sbjct: 95  GVDQNIFKWINTCLFAKE 112

BLAST of IVF0006604 vs. NCBI nr
Match: KAA0065462.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 1.65e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN
Sbjct: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60

Query: 61 GVDHNVFKLINACTSAKEG 79
          GVDHNVFKLINACTSAKEG
Sbjct: 61 GVDHNVFKLINACTSAKEG 79

BLAST of IVF0006604 vs. NCBI nr
Match: KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 8.86e-29
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          M AFL S+D+ CWKSVLTG E PS+KD A KTT K EIT TKE DEE  GN +ALNALFN
Sbjct: 1  MSAFLKSMDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFN 60

Query: 61 GVDHNVFKLINACTSAKE 78
          G++HNVFKLIN CTSAKE
Sbjct: 61 GINHNVFKLINTCTSAKE 78

BLAST of IVF0006604 vs. NCBI nr
Match: KAA0047417.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.71e-26
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 1  MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
          MIAFL SVD+  WKSV TGWE PSVKD A KTT K EIT TK+EDEE FGNSKALNALFN
Sbjct: 1  MIAFLKSVDSRYWKSVPTGWEPPSVKDEAGKTTLKPEITWTKKEDEESFGNSKALNALFN 60

Query: 61 GVDHNVFKLIN 71
          GVD NVFKLIN
Sbjct: 61 GVDQNVFKLIN 71

BLAST of IVF0006604 vs. NCBI nr
Match: TYJ98064.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 8.59e-24
Identity = 53/78 (67.95%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
           MIAFL SVD+  WKSVLTGWE PS+ D     T K +I   KEEDEE FGNSK LNAL N
Sbjct: 28  MIAFLKSVDSRSWKSVLTGWEPPSIIDATGIITLKPKIPWNKEEDEESFGNSKVLNALLN 87

Query: 61  GVDHNVFKLINACTSAKE 78
           GVD NV KLIN CTSAK+
Sbjct: 88  GVDQNVLKLINTCTSAKK 105

BLAST of IVF0006604 vs. NCBI nr
Match: KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.52e-23
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1   MIAFLNSVDNICWKSVLTGWESPSVKDVASKTTPKREITRTKEEDEELFGNSKALNALFN 60
           +IAF+ S+D+ CWK+++ G E PS KDVA K T K+EIT +K++DE  FGNS+ALNA+FN
Sbjct: 35  IIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFN 94

Query: 61  GVDHNVFKLINACTSAKE 78
           GVD N+FK IN C  AKE
Sbjct: 95  GVDQNIFKWINTCLFAKE 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAY37.0e-37100.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G0... [more]
A0A5D3CDY82.2e-2273.08Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... [more]
A0A5D3C1375.4e-2180.28Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119... [more]
A0A5D3BG633.0e-1967.95Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SVY31.5e-1860.26Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
Match NameE-valueIdentityDescription
KAA0065462.11.65e-49100.00gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0038855.18.86e-2973.08gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... [more]
KAA0047417.11.71e-2680.28gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04126.1 gag-pol polyprotein [... [more]
TYJ98064.18.59e-2467.95gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
KAA0035422.11.52e-2360.26gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006604.1IVF0006604.1mRNA