Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGATCAAAAAGCCACGATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAAATGGCATCCCAAACCAAAGTTGAGTCCATGGACAATGTGTTATGTGTTTAATTTCTTTGATAAATAAGTGGTGCTATAAGCTCCAAGTTTTAGGGTAATACTAGAAAGTTCATGAAGTTGGCCTTTTGACTTATGTAATATGTGTTAATCCAAACTTCATATGTGTGATGTATGGATGTATTTTCTCTGTGTTATTGCTT
mRNA sequence
CTCGATCAAAAAGCCACGATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAAATGGCATCCCAAACCAAAGTTGAGTCCATGGACAATGTGTTATGTGTTTAATTTCTTTGATAAATAAGTGGTGCTATAAGCTCCAAGTTTTAGGGTAATACTAGAAAGTTCATGAAGTTGGCCTTTTGACTTATGTAATATGTGTTAATCCAAACTTCATATGTGTGATGTATGGATGTATTTTCTCTGTGTTATTGCTT
Coding sequence (CDS)
ATGTTTCTCAAATACTTTCTTCTCCTTCTTCTCGCAGCTGTGCTTCTTTCCACAACTCAAGCCCTGAAACACCCCTCCACCTCCGACCAAGAAGTGATTCCGACCACCGATGTCACCCAAGGAACGCTCCCGACCACCATCGCCGATCCGAATGAAGAATCCAAATTCTACAGGAGGCCATTTCCCTACAAGAAGCCTTACAAGAGGCCACCCTACAAGAAGTATCCACCCTACAAGAAACGCCCTCCATACAAGAAATACCCACCATCTTCTCACTAA
Protein sequence
MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRPFPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Homology
BLAST of IVF0006187 vs. ExPASy TrEMBL
Match:
A0A5A7VEY7 (Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00050 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP
Sbjct: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 93
FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of IVF0006187 vs. ExPASy TrEMBL
Match:
A0A1S3CE34 (repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC103499417 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP
Sbjct: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 93
FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of IVF0006187 vs. ExPASy TrEMBL
Match:
A0A0A0LI79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLA VLL+TTQALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 15 MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 93
PYKKPYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 75 SPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106
BLAST of IVF0006187 vs. ExPASy TrEMBL
Match:
A0A0A0LNP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MF KYFLLLLLA VLL+TTQALKHP S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 15 MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 74
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 93
PYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 75 SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 106
BLAST of IVF0006187 vs. ExPASy TrEMBL
Match:
Q8H0R6 (Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MF KYFLLLLLA VLL+TTQALKHP S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1 MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 93
PYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61 SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of IVF0006187 vs. NCBI nr
Match:
XP_008460638.1 (PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo] >KAA0065667.1 repetitive proline-rich cell wall protein 3-like [Cucumis melo var. makuwa] >TYK15518.1 repetitive proline-rich cell wall protein 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 173 bits (438), Expect = 3.85e-54
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP
Sbjct: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of IVF0006187 vs. NCBI nr
Match:
XP_004147144.2 (repetitive proline-rich cell wall protein 3 [Cucumis sativus])
HSP 1 Score: 156 bits (395), Expect = 2.15e-47
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLA VLL+TTQALKHPS S+QEVIPTTDVT G LPTTI DPNEESKFYRRP
Sbjct: 15 MFLKYFLLLLLAVVLLTTTQALKHPSNSNQEVIPTTDVTHGKLPTTITDPNEESKFYRRP 74
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
PYKKPYKRPPYK+YPPYKKRPPYKKYPPSSH
Sbjct: 75 SPYKKPYKRPPYKRYPPYKKRPPYKKYPPSSH 106
BLAST of IVF0006187 vs. NCBI nr
Match:
NP_001267631.1 (uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 proline-rich protein [Cucumis sativus])
HSP 1 Score: 145 bits (367), Expect = 2.61e-43
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MF KYFLLLLLA VLL+TTQALKHP S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 1 MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 60
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
PYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 61 SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
BLAST of IVF0006187 vs. NCBI nr
Match:
KAE8651815.1 (hypothetical protein Csa_006392, partial [Cucumis sativus])
HSP 1 Score: 145 bits (367), Expect = 3.33e-43
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MF KYFLLLLLA VLL+TTQALKHP S+QE IP+TD+T G LPTTI DPNEESKF+RRP
Sbjct: 9 MFPKYFLLLLLAVVLLTTTQALKHPFNSNQERIPSTDLTHGKLPTTITDPNEESKFFRRP 68
Query: 61 FPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 92
PYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH
Sbjct: 69 SPYKKPYKRPPYKKYPPYKKRPPYKKYPPSSH 100
BLAST of IVF0006187 vs. NCBI nr
Match:
POE15980.1 (hypothetical protein BV923_23575 [Pectobacterium odoriferum])
HSP 1 Score: 122 bits (305), Expect = 7.39e-34
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 0
Query: 1 MFLKYFLLLLLAAVLLSTTQALKHPSTSDQEVIPTTDVTQGTLPTTIADPNEESKFYRRP 60
MFLKYFLLLLLA VLL+TTQALKHPS S+QEVIP TD T TT DP+EESKFY++P
Sbjct: 1 MFLKYFLLLLLAVVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDPDEESKFYKKP 60
Query: 61 FPYKKPY-KRPPYKKYPPYKKRPPYKKYPPSS 91
+ YK+PY KRPPYKKYPPYKK PPYKKYPPSS
Sbjct: 61 Y-YKRPYYKRPPYKKYPPYKKHPPYKKYPPSS 91
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VEY7 | 2.1e-40 | 100.00 | Repetitive proline-rich cell wall protein 3-like OS=Cucumis melo var. makuwa OX=... | [more] |
A0A1S3CE34 | 2.1e-40 | 100.00 | repetitive proline-rich cell wall protein 3-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A0A0LI79 | 2.0e-35 | 90.22 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176190 PE=4 SV=1 | [more] |
A0A0A0LNP2 | 3.5e-32 | 84.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176690 PE=4 SV=1 | [more] |
Q8H0R6 | 3.5e-32 | 84.78 | Proline-rich protein OS=Cucumis sativus OX=3659 GN=prp1 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_008460638.1 | 3.85e-54 | 100.00 | PREDICTED: repetitive proline-rich cell wall protein 3-like [Cucumis melo] >KAA0... | [more] |
XP_004147144.2 | 2.15e-47 | 90.22 | repetitive proline-rich cell wall protein 3 [Cucumis sativus] | [more] |
NP_001267631.1 | 2.61e-43 | 84.78 | uncharacterized protein LOC101210961 precursor [Cucumis sativus] >CAD44256.1 pro... | [more] |
KAE8651815.1 | 3.33e-43 | 84.78 | hypothetical protein Csa_006392, partial [Cucumis sativus] | [more] |
POE15980.1 | 7.39e-34 | 77.17 | hypothetical protein BV923_23575 [Pectobacterium odoriferum] | [more] |
Match Name | E-value | Identity | Description | |