Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA
mRNA sequence
ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA
Coding sequence (CDS)
ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA
Protein sequence
MAARLEQVSRLGLDRDCGSAWQRLWLGLAAISARLGQPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSLWLPSVSADGERRRSSKAHGRKKKRMRRKRWAAGGWRRNGMDGGRREKNGWRRAVERRKRKREKSMGGGGGAARVSSSSLFFFFCKLYIYIHINFNNYKQLIV
Homology
BLAST of IVF0006166 vs. ExPASy TrEMBL
Match:
A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 8.2e-08
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 69 MACPL--VDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 111
MACP+ VDA TADA PPRQ+RPMAGRARGTQKK+GRGRLSL
Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of IVF0006166 vs. ExPASy TrEMBL
Match:
A0A5A7VD11 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 69 MACPLVDAGLVTADAAPPRQRRPMAGRARGTQKK 103
MACP VDAG+ TADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48
BLAST of IVF0006166 vs. ExPASy TrEMBL
Match:
A0A5A7SMF0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00030 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.9e-05
Identity = 39/76 (51.32%), Postives = 43/76 (56.58%), Query Frame = 0
Query: 37 QPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPL--VDAGLVTADAAPPRQRRPMAG 96
+PTWSR F+ + TAV CP+ VDA T DAA RQRRPMA
Sbjct: 121 KPTWSR-----------FDFHTAAKHTAVAAEEVCPVTYVDARCTTDDAAQLRQRRPMAS 180
Query: 97 RARGTQKKDGRGRLSL 111
RARGTQKKDGR RL L
Sbjct: 181 RARGTQKKDGRRRLPL 185
BLAST of IVF0006166 vs. ExPASy TrEMBL
Match:
A0A5D3D2P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002650 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 30/49 (61.22%), Postives = 30/49 (61.22%), Query Frame = 0
Query: 62 TTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 111
T A VDA T D PRQRRPMAGRARGTQKKDGR RL L
Sbjct: 2 TAAAEEVCLVTYVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50
BLAST of IVF0006166 vs. NCBI nr
Match:
KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 66.6 bits (161), Expect = 4.70e-10
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 69 MACPL--VDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 110
MACP+ VDA TADA PPRQ+RPMAGRARGTQKK+GRGRLSL
Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of IVF0006166 vs. NCBI nr
Match:
KAA0066232.1 (transposase [Cucumis melo var. makuwa])
HSP 1 Score: 63.5 bits (153), Expect = 5.26e-09
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 69 MACPLVDAGLVTADAAPPRQRRPMAGRARGTQKK 102
MACP VDAG+ TADAAPPRQRRPMAGRARGT+KK
Sbjct: 15 MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48
BLAST of IVF0006166 vs. NCBI nr
Match:
KAA0031930.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 57.4 bits (137), Expect = 3.15e-06
Identity = 39/76 (51.32%), Postives = 43/76 (56.58%), Query Frame = 0
Query: 37 QPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPL--VDAGLVTADAAPPRQRRPMAG 96
+PTWSR F+ + TAV CP+ VDA T DAA RQRRPMA
Sbjct: 121 KPTWSR-----------FDFHTAAKHTAVAAEEVCPVTYVDARCTTDDAAQLRQRRPMAS 180
Query: 97 RARGTQKKDGRGRLSL 110
RARGTQKKDGR RL L
Sbjct: 181 RARGTQKKDGRRRLPL 185
BLAST of IVF0006166 vs. NCBI nr
Match:
TYK17960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 3.80e-05
Identity = 33/55 (60.00%), Postives = 34/55 (61.82%), Query Frame = 0
Query: 62 TTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSLWL-PSV 115
T A VDA T D PRQRRPMAGRARGTQKKDGR RL L + PSV
Sbjct: 2 TAAAEEVCLVTYVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPLDVFPSV 56
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VN13 | 8.2e-08 | 79.55 | NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7VD11 | 7.0e-07 | 88.24 | Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE... | [more] |
| A0A5A7SMF0 | 2.9e-05 | 51.32 | NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3D2P4 | 5.5e-04 | 61.22 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067956.1 | 4.70e-10 | 79.55 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
| KAA0066232.1 | 5.26e-09 | 88.24 | transposase [Cucumis melo var. makuwa] | [more] |
| KAA0031930.1 | 3.15e-06 | 51.32 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
| TYK17960.1 | 3.80e-05 | 60.00 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
