IVF0006166 (gene) Melon (IVF77) v1

Overview
NameIVF0006166
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr04: 10473212 .. 10473850 (+)
RNA-Seq ExpressionIVF0006166
SyntenyIVF0006166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA

mRNA sequence

ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA

Coding sequence (CDS)

ATGGCGGCTCGGCTCGAACAAGTATCGCGGCTCGGCTTGGACAGGGATTGTGGCTCGGCTTGGCAGCGATTGTGGCTCGGCTTGGCAGCGATCTCGGCTCGGCTTGGACAGCCGACTTGGAGCCGGGTCGGGTTGGACGAAGAAAATGGTAGCCGCGGTTTCGAGGGTCCTTTCTTCCGGCGAACGACGGCGGTACGAAGGCCGATGGCTTGCCCTCTCGTCGATGCTGGTTTGGTGACAGCCGACGCCGCACCACCGAGGCAGAGACGGCCGATGGCTGGCCGTGCACGCGGAACCCAGAAGAAGGACGGTCGTGGACGGCTGTCACTGTGGCTTCCGTCGGTGAGTGCGGATGGAGAGAGACGGCGGTCGTCGAAGGCGCACGGACGGAAGAAGAAAAGAATGAGGAGGAAGAGATGGGCTGCTGGCGGTTGGAGGCGGAACGGAATGGATGGAGGACGAAGAGAAAAAAATGGGTGGCGGCGCGCGGTGGAGAGGAGAAAACGGAAGAGAGAAAAATCGATGGGGGGGGGGGGCGGCGCGGCTAGGGTTTCTTCTTCTTCTCTTTTTTTTTTTTTTTGTAAATTATATATATATATACATATAAACTTTAATAATTATAAACAATTAATAGTTTAA

Protein sequence

MAARLEQVSRLGLDRDCGSAWQRLWLGLAAISARLGQPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSLWLPSVSADGERRRSSKAHGRKKKRMRRKRWAAGGWRRNGMDGGRREKNGWRRAVERRKRKREKSMGGGGGAARVSSSSLFFFFCKLYIYIHINFNNYKQLIV
Homology
BLAST of IVF0006166 vs. ExPASy TrEMBL
Match: A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.2e-08
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 69  MACPL--VDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 111
           MACP+  VDA   TADA PPRQ+RPMAGRARGTQKK+GRGRLSL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

BLAST of IVF0006166 vs. ExPASy TrEMBL
Match: A0A5A7VD11 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 69  MACPLVDAGLVTADAAPPRQRRPMAGRARGTQKK 103
           MACP VDAG+ TADAAPPRQRRPMAGRARGT+KK
Sbjct: 15  MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48

BLAST of IVF0006166 vs. ExPASy TrEMBL
Match: A0A5A7SMF0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00030 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-05
Identity = 39/76 (51.32%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 37  QPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPL--VDAGLVTADAAPPRQRRPMAG 96
           +PTWSR           F+     + TAV     CP+  VDA   T DAA  RQRRPMA 
Sbjct: 121 KPTWSR-----------FDFHTAAKHTAVAAEEVCPVTYVDARCTTDDAAQLRQRRPMAS 180

Query: 97  RARGTQKKDGRGRLSL 111
           RARGTQKKDGR RL L
Sbjct: 181 RARGTQKKDGRRRLPL 185

BLAST of IVF0006166 vs. ExPASy TrEMBL
Match: A0A5D3D2P4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002650 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 30/49 (61.22%), Postives = 30/49 (61.22%), Query Frame = 0

Query: 62  TTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 111
           T A         VDA   T D   PRQRRPMAGRARGTQKKDGR RL L
Sbjct: 2   TAAAEEVCLVTYVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPL 50

BLAST of IVF0006166 vs. NCBI nr
Match: KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 4.70e-10
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0

Query: 69  MACPL--VDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSL 110
           MACP+  VDA   TADA PPRQ+RPMAGRARGTQKK+GRGRLSL
Sbjct: 90  MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133

BLAST of IVF0006166 vs. NCBI nr
Match: KAA0066232.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 5.26e-09
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 69  MACPLVDAGLVTADAAPPRQRRPMAGRARGTQKK 102
           MACP VDAG+ TADAAPPRQRRPMAGRARGT+KK
Sbjct: 15  MACPYVDAGMATADAAPPRQRRPMAGRARGTRKK 48

BLAST of IVF0006166 vs. NCBI nr
Match: KAA0031930.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 3.15e-06
Identity = 39/76 (51.32%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 37  QPTWSRVGLDEENGSRGFEGPFFRRTTAVRRPMACPL--VDAGLVTADAAPPRQRRPMAG 96
           +PTWSR           F+     + TAV     CP+  VDA   T DAA  RQRRPMA 
Sbjct: 121 KPTWSR-----------FDFHTAAKHTAVAAEEVCPVTYVDARCTTDDAAQLRQRRPMAS 180

Query: 97  RARGTQKKDGRGRLSL 110
           RARGTQKKDGR RL L
Sbjct: 181 RARGTQKKDGRRRLPL 185

BLAST of IVF0006166 vs. NCBI nr
Match: TYK17960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.80e-05
Identity = 33/55 (60.00%), Postives = 34/55 (61.82%), Query Frame = 0

Query: 62  TTAVRRPMACPLVDAGLVTADAAPPRQRRPMAGRARGTQKKDGRGRLSLWL-PSV 115
           T A         VDA   T D   PRQRRPMAGRARGTQKKDGR RL L + PSV
Sbjct: 2   TAAAEEVCLVTYVDARYTTIDTVQPRQRRPMAGRARGTQKKDGRRRLPLDVFPSV 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VN138.2e-0879.55NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VD117.0e-0788.24Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002580 PE... [more]
A0A5A7SMF02.9e-0551.32NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3D2P45.5e-0461.22Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0067956.14.70e-1079.55NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0066232.15.26e-0988.24transposase [Cucumis melo var. makuwa][more]
KAA0031930.13.15e-0651.32NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK17960.13.80e-0560.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006166.1IVF0006166.1mRNA