IVF0005944 (gene) Melon (IVF77) v1

Overview
NameIVF0005944
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr03: 14183563 .. 14183799 (+)
RNA-Seq ExpressionIVF0005944
SyntenyIVF0005944
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCGAGCAACGAGATAGTAAGAATTTAATCGATGTGTGGACGAGATTTAAAAGGAAGGTCAAGAGATGCCCTCACCATTGCATCCTTGAATGCGTTTTGATGGAGCAGTTCTATTTTGGGCTGAGTGAGGATACACAACAATCTGCTGACACTATGTTTACAGGTATGATGTTGAGATCATTATACAACCAGATCAAGAATGCATTGGATGTTATGGCCAGAAATAGTTAG

mRNA sequence

ATGACCTTCGAGCAACGAGATAGTAAGAATTTAATCGATGTGTGGACGAGATTTAAAAGGAAGGTCAAGAGATGCCCTCACCATTGCATCCTTGAATGCGTTTTGATGGAGCAGTTCTATTTTGGGCTGAGTGAGGATACACAACAATCTGCTGACACTATGTTTACAGGTATGATGTTGAGATCATTATACAACCAGATCAAGAATGCATTGGATGTTATGGCCAGAAATAGTTAG

Coding sequence (CDS)

ATGACCTTCGAGCAACGAGATAGTAAGAATTTAATCGATGTGTGGACGAGATTTAAAAGGAAGGTCAAGAGATGCCCTCACCATTGCATCCTTGAATGCGTTTTGATGGAGCAGTTCTATTTTGGGCTGAGTGAGGATACACAACAATCTGCTGACACTATGTTTACAGGTATGATGTTGAGATCATTATACAACCAGATCAAGAATGCATTGGATGTTATGGCCAGAAATAGTTAG

Protein sequence

MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMMLRSLYNQIKNALDVMARNS
Homology
BLAST of IVF0005944 vs. ExPASy TrEMBL
Match: A0A5D3D677 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold368G00040 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-27
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTG + 
Sbjct: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGQLT 60

Query: 61 RSLYNQIKNAL 72
            + N+ K +L
Sbjct: 61 SDISNRPKRSL 71

BLAST of IVF0005944 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.0e-27
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          MTFEQRD +NLIDVW RFKR +KRCPHHCI ECVLMEQFYFGLS++T QSA+ +FTG ML
Sbjct: 1  MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61 RSLYNQIKNALDVMARNS 79
          RS YNQIKN LD MA NS
Sbjct: 61 RSSYNQIKNMLDTMASNS 78

BLAST of IVF0005944 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          M F+QRD +N+ D W+RFKR VK CP H I ECV ME FYFGLS+DT Q  +T+F G ML
Sbjct: 1  MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61 RSLYNQIKNALDVMARNS 79
          RS YNQIK  LD M+ NS
Sbjct: 61 RSSYNQIKATLDSMSNNS 78

BLAST of IVF0005944 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 3   FEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMMLRS 62
           F+QRD KNL D W+ FKR VK C HH I + VLME FYFGLS+DT+QSAD++F G +LRS
Sbjct: 100 FKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGILRS 159

Query: 63  LYNQIKNALDVMARNS 79
            YNQIK  LD MA NS
Sbjct: 160 SYNQIKAMLDSMANNS 175

BLAST of IVF0005944 vs. ExPASy TrEMBL
Match: A0A5D3DEY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00470 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.5e-18
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 5  QRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMMLRSLY 64
          +RDS+NLID W + K  +KRC HH IL CVL EQFYFGLS+DTQQ  D +FTG MLRS Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSY 71

Query: 65 NQIKNALDVMARNS 79
          +Q+K AL+    NS
Sbjct: 72 SQVKTALNTKPNNS 85

BLAST of IVF0005944 vs. NCBI nr
Match: KAA0049658.1 (uncharacterized protein E6C27_scaffold163G001290 [Cucumis melo var. makuwa] >TYK19035.1 uncharacterized protein E5676_scaffold368G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 6.76e-36
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTG + 
Sbjct: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGQLT 60

Query: 61 RSLYNQIKNAL 71
            + N+ K +L
Sbjct: 61 SDISNRPKRSL 71

BLAST of IVF0005944 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 6.73e-34
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          MTFEQRD +NLIDVW RFKR +KRCPHHCI ECVLMEQFYFGLS++T QSA+ +FTG ML
Sbjct: 1  MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61 RSLYNQIKNALDVMARNS 78
          RS YNQIKN LD MA NS
Sbjct: 61 RSSYNQIKNMLDTMASNS 78

BLAST of IVF0005944 vs. NCBI nr
Match: TYK21909.1 (hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 3.56e-25
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0

Query: 5  QRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMMLRSLY 64
          +RDS+NLID W + K  +KRC HH IL CVL EQFYFGLS+DTQQ  D +FTG MLRS Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSY 71

Query: 65 NQIKNALDVMARNS 78
          +Q+K AL+    NS
Sbjct: 72 SQVKTALNTKPNNS 85

BLAST of IVF0005944 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 100 bits (250), Expect = 7.40e-25
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMML 60
          M F+QRD +N+ D W+RFKR VK CP H I ECV ME FYFGLS+DT Q  +T+F G ML
Sbjct: 1  MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61 RSLYNQIKNALDVMARNS 78
          RS YNQIK  LD M+ NS
Sbjct: 61 RSSYNQIKATLDSMSNNS 78

BLAST of IVF0005944 vs. NCBI nr
Match: KAA0041115.1 (hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 1.69e-23
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 5  QRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTGMMLRSLY 64
          +RDS+NLID W + K  +KRC HH IL CV  EQFYFGLS+DT+Q  D +FTG MLRS Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVPTEQFYFGLSKDTRQFVDAVFTGGMLRSSY 71

Query: 65 NQIKNALDVMARNS 78
          +Q+K AL+    NS
Sbjct: 72 SQVKTALNTKPNNS 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D6773.8e-2784.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CC265.0e-2778.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F91.9e-1862.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5A7V1F34.2e-1865.79Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DEY45.5e-1862.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0049658.16.76e-3684.51uncharacterized protein E6C27_scaffold163G001290 [Cucumis melo var. makuwa] >TYK... [more]
KAA0048713.16.73e-3478.21hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
TYK21909.13.56e-2562.16hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa][more]
KGN44484.17.40e-2562.82hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0041115.11.69e-2359.46hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005944.2IVF0005944.2mRNA